# 2020/10/04 22:57:03
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR022657	Replication ID
# SRP000542	Sample ID
# SRR022657_1.filt	Read1
# SRR022657_2.filt	Read2
R1	        8817928 (100.0000%)	[A] Total raw reads
R1	        7841586 (88.9278%)	[B] Total reads after QC of (A)
R1		
R1	        7841586 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       14296422 (91.1577%)	[B-3] Total mapped reads of (B-2)x2
R1	        1386750 (8.8423%)	[B-4] Total unmapped reads of (B-2)x2
R1	        7152918 (91.2177%)	[F] Total mapped reads of (B-2)
R1	         688668 (8.7823%)	[G] Total unmapped reads of (B-2)
R1	          86117 (1.0982%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        7755469 (98.9018%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           9535 (0.1216%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1229.455	[I-3] RPMH of (I-1)
R1	      1215.953	[I-4] PPM of (I-1)
R1	    110721.460	[I-5] RPMU of (I-1)
R1	             51 (0.0007%)	[I-6] Total chimeric reads of (I-1)
R1	         6.576	[I-7] RPMH of (I-6)
R1	         6.504	[I-8] PPM of (I-6)
R1	       592.218	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        8817928 (100.0000%)	[A] Total raw reads
R2	        7841586 (88.9278%)	[B] Total reads after QC of (A)
R2		
R2	        7841586 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       14296422 (91.1577%)	[B-3] Total mapped reads of (B-2)x2
R2	        1386750 (8.8423%)	[B-4] Total unmapped reads of (B-2)x2
R2	        7143504 (91.0977%)	[F] Total mapped reads of (B-2)
R2	         698082 (8.9023%)	[G] Total unmapped reads of (B-2)
R2	          85020 (1.0842%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        7756566 (98.9158%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           9531 (0.1215%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1228.765	[I-3] RPMH of (I-1)
R2	      1215.443	[I-4] PPM of (I-1)
R2	    112103.035	[I-5] RPMU of (I-1)
R2	             45 (0.0006%)	[I-6] Total chimeric reads of (I-1)
R2	         5.801	[I-7] RPMH of (I-6)
R2	         5.739	[I-8] PPM of (I-6)
R2	       529.287	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
3.3661	3.3292	303.1457	55	46	9	26.106	3517	ALL_R1	bacteria	Alcanivorax	9.92e-05
<<
1212.1769	1198.8646	109165.4377	9401	0	9401	9401.000	651157	ALL_R1	viral	Lymphocryptovirus	0.0
2.2744	2.2494	204.8260	47	46	1	17.639	3455	ALL_R1	viral	Phix174microvirus	n/a
<<
5.0308	4.9763	458.9744	68	46	22	39.022	4359	ALL_R2	bacteria	Alcanivorax	3.80e-29
1.1603	1.1477	105.8574	9	0	9	9.000	679	ALL_R2	bacteria	Vibrio	7.55e-05
<<
1209.0402	1195.9315	110303.4580	9378	0	9378	9378.000	645485	ALL_R2	viral	Lymphocryptovirus	0.0
5.7203	5.6583	521.8772	45	1	44	44.370	3302	ALL_R2	viral	Phix174microvirus	n/a
<<
0.1769	0.1750	15.9318	2	1	1	1.372	152	R1U	bacteria	Alcanivorax	n/a	
<<
6.1892	6.1212	557.3812	48	0	48	48.000	3284	R1U	viral	Lymphocryptovirus	n/a	
0.1289	0.1275	11.6121	1	0	1	1.000	76	R1U	viral	Lambdavirus	n/a	
<<
0.2720	0.2691	24.8177	4	3	1	2.110	304	R2U	bacteria	Alcanivorax	n/a	
0.1289	0.1275	11.7619	1	0	1	1.000	39	R2U	bacteria	Brachyspira	n/a	
<<
0.1289	0.1275	11.7619	1	0	1	1.000	36	R2U	fungi	Bipolaris	n/a	
<<
5.0280	4.9735	458.7156	39	0	39	39.000	2593	R2U	viral	Lymphocryptovirus	n/a