# 2020/10/04 22:10:34
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR022656	Replication ID
# SRP000542	Sample ID
# SRR022656_1.filt	Read1
# SRR022656_2.filt	Read2
R1	        9786217 (100.0000%)	[A] Total raw reads
R1	        8806782 (89.9917%)	[B] Total reads after QC of (A)
R1		
R1	        8806782 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       15954471 (90.5806%)	[B-3] Total mapped reads of (B-2)x2
R1	        1659093 (9.4194%)	[B-4] Total unmapped reads of (B-2)x2
R1	        7997172 (90.8070%)	[F] Total mapped reads of (B-2)
R1	         809610 (9.1930%)	[G] Total unmapped reads of (B-2)
R1	         104959 (1.1918%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        8701823 (98.8082%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          10474 (0.1189%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1203.656	[I-3] RPMH of (I-1)
R1	      1189.311	[I-4] PPM of (I-1)
R1	     99791.347	[I-5] RPMU of (I-1)
R1	             46 (0.0005%)	[I-6] Total chimeric reads of (I-1)
R1	         5.286	[I-7] RPMH of (I-6)
R1	         5.223	[I-8] PPM of (I-6)
R1	       438.266	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        9786217 (100.0000%)	[A] Total raw reads
R2	        8806782 (89.9917%)	[B] Total reads after QC of (A)
R2		
R2	        8806782 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       15954471 (90.5806%)	[B-3] Total mapped reads of (B-2)x2
R2	        1659093 (9.4194%)	[B-4] Total unmapped reads of (B-2)x2
R2	        7957299 (90.3542%)	[F] Total mapped reads of (B-2)
R2	         849483 (9.6458%)	[G] Total unmapped reads of (B-2)
R2	         117824 (1.3379%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        8688958 (98.6621%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          10501 (0.1192%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1208.545	[I-3] RPMH of (I-1)
R2	      1192.376	[I-4] PPM of (I-1)
R2	     89124.457	[I-5] RPMU of (I-1)
R2	             41 (0.0005%)	[I-6] Total chimeric reads of (I-1)
R2	         4.719	[I-7] RPMH of (I-6)
R2	         4.656	[I-8] PPM of (I-6)
R2	       347.977	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
3.2345	3.1959	268.1619	47	30	17	28.146	3339	ALL_R1	bacteria	Alcanivorax	5.53e-16
<<
1186.1882	1172.0513	98343.1626	10322	0	10322	10322.000	750732	ALL_R1	viral	Lymphocryptovirus	0.0
<<
5.4385	5.3658	401.0643	85	60	25	47.255	5939	ALL_R2	bacteria	Alcanivorax	1.55e-36
3.5117	3.4647	258.9710	67	58	9	30.513	4687	ALL_R2	bacteria	Tetrasphaera	4.79e-05
1.6112	1.5897	118.8213	14	0	14	14.000	1039	ALL_R2	bacteria	Vibrio	2.67e-12
<<
1185.4126	1169.5532	87418.5225	10300	0	10300	10300.000	744845	ALL_R2	viral	Lymphocryptovirus	0.0
6.4877	6.4009	478.4339	57	1	56	56.371	4240	ALL_R2	viral	Phix174microvirus	n/a
<<
0.2298	0.2271	19.0551	2	0	2	2.000	152	R1U	bacteria	Alcanivorax	n/a	
<<
5.0564	4.9961	419.2113	44	0	44	44.000	3206	R1U	viral	Lymphocryptovirus	n/a	
<<
0.2005	0.1978	14.7848	3	2	1	1.742	228	R2U	bacteria	Alcanivorax	n/a	
0.1151	0.1135	8.4872	1	0	1	1.000	36	R2U	bacteria	Streptomyces	n/a	
<<
4.2583	4.2013	314.0277	37	0	37	37.000	2602	R2U	viral	Lymphocryptovirus	n/a