# 2020/09/20 21:43:19
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR244987	Replication ID
# SRP000547	Sample ID
# ERR244987_1.filt	Read1
# ERR244987_2.filt	Read2
R1	        1783061 (100.0000%)	[A] Total raw reads
R1	        1744564 (97.8410%)	[B] Total reads after QC of (A)
R1		
R1	        1744564 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3230830 (92.5971%)	[B-3] Total mapped reads of (B-2)x2
R1	         258298 (7.4029%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1625529 (93.1768%)	[F] Total mapped reads of (B-2)
R1	         119035 (6.8232%)	[G] Total unmapped reads of (B-2)
R1	          17247 (0.9886%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1727317 (99.0114%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           6256 (0.3586%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      3621.802	[I-3] RPMH of (I-1)
R1	      3585.996	[I-4] PPM of (I-1)
R1	    362729.750	[I-5] RPMU of (I-1)
R1	             18 (0.0010%)	[I-6] Total chimeric reads of (I-1)
R1	        10.421	[I-7] RPMH of (I-6)
R1	        10.318	[I-8] PPM of (I-6)
R1	      1043.660	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1783061 (100.0000%)	[A] Total raw reads
R2	        1744564 (97.8410%)	[B] Total reads after QC of (A)
R2		
R2	        1744564 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3230830 (92.5971%)	[B-3] Total mapped reads of (B-2)x2
R2	         258298 (7.4029%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1605301 (92.0173%)	[F] Total mapped reads of (B-2)
R2	         139263 (7.9827%)	[G] Total unmapped reads of (B-2)
R2	          25089 (1.4381%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1719475 (98.5619%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           6195 (0.3551%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      3602.844	[I-3] RPMH of (I-1)
R2	      3551.030	[I-4] PPM of (I-1)
R2	    246920.961	[I-5] RPMU of (I-1)
R2	             15 (0.0009%)	[I-6] Total chimeric reads of (I-1)
R2	         8.724	[I-7] RPMH of (I-6)
R2	         8.598	[I-8] PPM of (I-6)
R2	       597.872	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
3621.2230	3585.4231	362671.7690	6255	0	6255	6255.000	623991	ALL_R1	viral	Lymphocryptovirus	0.0
<<
3602.8439	3551.0305	246920.9614	6195	0	6195	6195.000	618505	ALL_R2	viral	Lymphocryptovirus	0.0
<<
10.4208	10.3178	1043.6598	18	0	18	18.000	1794	R1U	viral	Lymphocryptovirus	n/a	
<<
8.7236	8.5981	597.8716	15	0	15	15.000	1499	R2U	viral	Lymphocryptovirus	n/a