# 2020/10/01 02:36:33
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243298	Replication ID
# SRP000547	Sample ID
# ERR243298_1.filt	Read1
# ERR243298_2.filt	Read2
R1	        4579726 (100.0000%)	[A] Total raw reads
R1	        4502738 (98.3189%)	[B] Total reads after QC of (A)
R1		
R1	        4502738 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        8335840 (92.5641%)	[B-3] Total mapped reads of (B-2)x2
R1	         669636 (7.4359%)	[B-4] Total unmapped reads of (B-2)x2
R1	        4190729 (93.0707%)	[F] Total mapped reads of (B-2)
R1	         312009 (6.9293%)	[G] Total unmapped reads of (B-2)
R1	          37566 (0.8343%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        4465172 (99.1657%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           9357 (0.2078%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      2095.552	[I-3] RPMH of (I-1)
R1	      2078.069	[I-4] PPM of (I-1)
R1	    249081.616	[I-5] RPMU of (I-1)
R1	             10 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         2.240	[I-7] RPMH of (I-6)
R1	         2.221	[I-8] PPM of (I-6)
R1	       266.198	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        4579726 (100.0000%)	[A] Total raw reads
R2	        4502738 (98.3189%)	[B] Total reads after QC of (A)
R2		
R2	        4502738 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        8335840 (92.5641%)	[B-3] Total mapped reads of (B-2)x2
R2	         669636 (7.4359%)	[B-4] Total unmapped reads of (B-2)x2
R2	        4145111 (92.0576%)	[F] Total mapped reads of (B-2)
R2	         357627 (7.9424%)	[G] Total unmapped reads of (B-2)
R2	          55534 (1.2333%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        4447204 (98.7667%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           9197 (0.2043%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      2068.041	[I-3] RPMH of (I-1)
R2	      2042.535	[I-4] PPM of (I-1)
R2	    165610.257	[I-5] RPMU of (I-1)
R2	              7 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R2	         1.574	[I-7] RPMH of (I-6)
R2	         1.555	[I-8] PPM of (I-6)
R2	       126.049	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2093.0885	2075.6260	248788.7984	9346	0	9346	9346.000	933449	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2066.0172	2040.5362	165448.1939	9188	0	9188	9188.000	917478	ALL_R2	viral	Lymphocryptovirus	0.0
<<
2.0156	1.9988	239.5783	9	0	9	9.000	899	R1U	viral	Lymphocryptovirus	n/a	
<<
1.5740	1.5546	126.0489	7	0	7	7.000	699	R2U	viral	Lymphocryptovirus	n/a