# 2020/09/30 23:25:03
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243122	Replication ID
# SRP000547	Sample ID
# ERR243122_1.filt	Read1
# ERR243122_2.filt	Read2
R1	        4411594 (100.0000%)	[A] Total raw reads
R1	        4338055 (98.3331%)	[B] Total reads after QC of (A)
R1		
R1	        4338055 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        8013914 (92.3676%)	[B-3] Total mapped reads of (B-2)x2
R1	         662196 (7.6324%)	[B-4] Total unmapped reads of (B-2)x2
R1	        4029134 (92.8788%)	[F] Total mapped reads of (B-2)
R1	         308921 (7.1212%)	[G] Total unmapped reads of (B-2)
R1	          36358 (0.8381%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        4301697 (99.1619%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           8616 (0.1986%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      2002.930	[I-3] RPMH of (I-1)
R1	      1986.144	[I-4] PPM of (I-1)
R1	    236976.731	[I-5] RPMU of (I-1)
R1	              9 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         2.092	[I-7] RPMH of (I-6)
R1	         2.075	[I-8] PPM of (I-6)
R1	       247.538	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        4411594 (100.0000%)	[A] Total raw reads
R2	        4338055 (98.3331%)	[B] Total reads after QC of (A)
R2		
R2	        4338055 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        8013914 (92.3676%)	[B-3] Total mapped reads of (B-2)x2
R2	         662196 (7.6324%)	[B-4] Total unmapped reads of (B-2)x2
R2	        3984780 (91.8564%)	[F] Total mapped reads of (B-2)
R2	         353275 (8.1436%)	[G] Total unmapped reads of (B-2)
R2	          54377 (1.2535%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        4283678 (98.7465%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           8525 (0.1965%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1990.112	[I-3] RPMH of (I-1)
R2	      1965.166	[I-4] PPM of (I-1)
R2	    156775.843	[I-5] RPMU of (I-1)
R2	              2 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R2	         0.467	[I-7] RPMH of (I-6)
R2	         0.461	[I-8] PPM of (I-6)
R2	        36.780	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2000.1409	1983.3773	236646.6802	8604	0	8604	8604.000	859000	ALL_R1	viral	Lymphocryptovirus	0.0
0.4649	0.4610	55.0085	2	0	2	2.000	84	ALL_R1	viral	Phix174microvirus	n/a
<<
1988.0112	1963.0918	156610.3316	8516	0	8516	8516.000	850092	ALL_R2	viral	Lymphocryptovirus	0.0
<<
2.0922	2.0747	247.5384	9	0	9	9.000	899	R1U	viral	Lymphocryptovirus	n/a	
<<
0.4669	0.4610	36.7803	2	0	2	2.000	200	R2U	viral	Lymphocryptovirus	n/a