# 2020/09/05 01:20:22
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR239452	Replication ID
# SRP000542	Sample ID
# ERR239452_1.filt	Read1
# ERR239452_2.filt	Read2
R1	        8033493 (100.0000%)	[A] Total raw reads
R1	        7901611 (98.3583%)	[B] Total reads after QC of (A)
R1		
R1	        7901611 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       14626752 (92.5555%)	[B-3] Total mapped reads of (B-2)x2
R1	        1176470 (7.4445%)	[B-4] Total unmapped reads of (B-2)x2
R1	        7349098 (93.0076%)	[F] Total mapped reads of (B-2)
R1	         552513 (6.9924%)	[G] Total unmapped reads of (B-2)
R1	          66357 (0.8398%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        7835254 (99.1602%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          11649 (0.1474%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1486.742	[I-3] RPMH of (I-1)
R1	      1474.256	[I-4] PPM of (I-1)
R1	    175550.432	[I-5] RPMU of (I-1)
R1	              8 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         1.021	[I-7] RPMH of (I-6)
R1	         1.013	[I-8] PPM of (I-6)
R1	       120.560	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        8033493 (100.0000%)	[A] Total raw reads
R2	        7901611 (98.3583%)	[B] Total reads after QC of (A)
R2		
R2	        7901611 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       14626752 (92.5555%)	[B-3] Total mapped reads of (B-2)x2
R2	        1176470 (7.4445%)	[B-4] Total unmapped reads of (B-2)x2
R2	        7277654 (92.1034%)	[F] Total mapped reads of (B-2)
R2	         623957 (7.8966%)	[G] Total unmapped reads of (B-2)
R2	          94675 (1.1982%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        7806936 (98.8018%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          11489 (0.1454%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1471.640	[I-3] RPMH of (I-1)
R2	      1454.007	[I-4] PPM of (I-1)
R2	    121351.994	[I-5] RPMU of (I-1)
R2	             14 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R2	         1.793	[I-7] RPMH of (I-6)
R2	         1.772	[I-8] PPM of (I-6)
R2	       147.874	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
6.7776	6.7207	800.2773	55	3	52	53.104	5483	ALL_R1	bacteria	Ralstonia	7.79e-75
<<
1478.8289	1466.4098	174616.0917	11587	0	11587	11587.000	1155586	ALL_R1	viral	Lymphocryptovirus	0.0
<<
6.4353	6.3582	530.6575	53	4	49	50.240	5282	ALL_R2	bacteria	Ralstonia	5.23e-68
<<
1463.6984	1446.1608	120697.1217	11427	0	11427	11427.000	1139171	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.0210	1.0125	120.5600	8	0	8	8.000	800	R1U	viral	Lymphocryptovirus	n/a	
<<
1.6652	1.6452	137.3119	13	0	13	13.000	1297	R2U	viral	Lymphocryptovirus	n/a	
0.1281	0.1266	10.5625	1	0	1	1.000	98	R2U	viral	Phix174microvirus	n/a