# 2020/09/12 18:22:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR162828	Replication ID
# SRP000547	Sample ID
# ERR162828_1.filt	Read1
# ERR162828_2.filt	Read2
R1	       20789857 (100.0000%)	[A] Total raw reads
R1	       20389777 (98.0756%)	[B] Total reads after QC of (A)
R1		
R1	       20389777 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       37271470 (91.3974%)	[B-3] Total mapped reads of (B-2)x2
R1	        3508084 (8.6026%)	[B-4] Total unmapped reads of (B-2)x2
R1	       18867281 (92.5330%)	[F] Total mapped reads of (B-2)
R1	        1522496 (7.4670%)	[G] Total unmapped reads of (B-2)
R1	         232669 (1.1411%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       20157108 (98.8589%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          74053 (0.3632%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      3673.791	[I-3] RPMH of (I-1)
R1	      3631.869	[I-4] PPM of (I-1)
R1	    318276.178	[I-5] RPMU of (I-1)
R1	              5 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R1	         0.248	[I-7] RPMH of (I-6)
R1	         0.245	[I-8] PPM of (I-6)
R1	        21.490	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       20789857 (100.0000%)	[A] Total raw reads
R2	       20389777 (98.0756%)	[B] Total reads after QC of (A)
R2		
R2	       20389777 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       37271470 (91.3974%)	[B-3] Total mapped reads of (B-2)x2
R2	        3508084 (8.6026%)	[B-4] Total unmapped reads of (B-2)x2
R2	       18404189 (90.2618%)	[F] Total mapped reads of (B-2)
R2	        1985588 (9.7382%)	[G] Total unmapped reads of (B-2)
R2	         394262 (1.9336%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       19995515 (98.0664%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          72809 (0.3571%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      3641.267	[I-3] RPMH of (I-1)
R2	      3570.858	[I-4] PPM of (I-1)
R2	    184671.614	[I-5] RPMU of (I-1)
R2	              5 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R2	         0.250	[I-7] RPMH of (I-6)
R2	         0.245	[I-8] PPM of (I-6)
R2	        12.682	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
3671.7073	3629.8092	318095.6638	74011	0	74011	74011.000	7376005	ALL_R1	viral	Lymphocryptovirus	0.0
<<
3639.4662	3569.0925	184580.3045	72773	0	72773	72773.000	7231138	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.1984	0.1962	17.1918	4	0	4	4.000	399	R1U	viral	Lymphocryptovirus	n/a	
<<
0.2000	0.1962	10.1455	4	0	4	4.000	389	R2U	viral	Lymphocryptovirus	n/a