# 2020/09/28 21:37:34
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR018451	Replication ID
# SRP000808	Sample ID
# ERR018451_1.filt	Read1
# ERR018451_2.filt	Read2
R1	       32641049 (100.0000%)	[A] Total raw reads
R1	       26850568 (82.2601%)	[B] Total reads after QC of (A)
R1		
R1	       26850568 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       49514227 (92.2033%)	[B-3] Total mapped reads of (B-2)x2
R1	        4186909 (7.7967%)	[B-4] Total unmapped reads of (B-2)x2
R1	       24703270 (92.0028%)	[F] Total mapped reads of (B-2)
R1	        2147298 (7.9972%)	[G] Total unmapped reads of (B-2)
R1	         178090 (0.6633%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       26672478 (99.3367%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          18426 (0.0686%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       690.825	[I-3] RPMH of (I-1)
R1	       686.242	[I-4] PPM of (I-1)
R1	    103464.540	[I-5] RPMU of (I-1)
R1	             93 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R1	         3.487	[I-7] RPMH of (I-6)
R1	         3.464	[I-8] PPM of (I-6)
R1	       522.208	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       32641049 (100.0000%)	[A] Total raw reads
R2	       26850568 (82.2601%)	[B] Total reads after QC of (A)
R2		
R2	       26850568 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       49514227 (92.2033%)	[B-3] Total mapped reads of (B-2)x2
R2	        4186909 (7.7967%)	[B-4] Total unmapped reads of (B-2)x2
R2	       24810957 (92.4038%)	[F] Total mapped reads of (B-2)
R2	        2039611 (7.5962%)	[G] Total unmapped reads of (B-2)
R2	         171379 (0.6383%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       26679189 (99.3617%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          18361 (0.0684%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       688.214	[I-3] RPMH of (I-1)
R2	       683.822	[I-4] PPM of (I-1)
R2	    107136.814	[I-5] RPMU of (I-1)
R2	             51 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R2	         1.912	[I-7] RPMH of (I-6)
R2	         1.899	[I-8] PPM of (I-6)
R2	       297.586	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1.0103	1.0036	151.3167	44	27	17	26.948	3113	ALL_R1	bacteria	Alcanivorax	3.62e-05
<<
688.2750	683.7099	103082.7110	18358	0	18358	18358.000	1312449	ALL_R1	viral	Lymphocryptovirus	0.0
<<
686.7150	682.3319	106903.4129	18321	0	18321	18321.000	1262151	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.0513	0.0509	7.6815	2	1	1	1.368	131	R1U	bacteria	Alcanivorax	n/a	
0.0375	0.0372	5.6151	1	0	1	1.000	38	R1U	bacteria	Clostridium	n/a	
<<
0.0375	0.0372	5.6151	1	0	1	1.000	76	R1U	fungi	Mitosporidium	n/a	
<<
3.2993	3.2774	494.1322	88	0	88	88.000	6074	R1U	viral	Lymphocryptovirus	n/a	
<<
1.9116	1.8994	297.5861	51	0	51	51.000	3284	R2U	viral	Lymphocryptovirus	n/a