# 2020/08/22 00:11:07
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR791477	Replication ID
# SRP000547	Sample ID
# SRR791477_1.filt	Read1
# SRR791477_2.filt	Read2
R1	        9781335 (100.0000%)	[A] Total raw reads
R1	        7703964 (78.7619%)	[B] Total reads after QC of (A)
R1		
R1	        7703964 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       13962653 (90.6199%)	[B-3] Total mapped reads of (B-2)x2
R1	        1445275 (9.3801%)	[B-4] Total unmapped reads of (B-2)x2
R1	        7047674 (91.4811%)	[F] Total mapped reads of (B-2)
R1	         656290 (8.5189%)	[G] Total unmapped reads of (B-2)
R1	          90665 (1.1769%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        7613299 (98.8231%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          10722 (0.1392%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1408.325	[I-3] RPMH of (I-1)
R1	      1391.751	[I-4] PPM of (I-1)
R1	    118259.527	[I-5] RPMU of (I-1)
R1	             67 (0.0009%)	[I-6] Total chimeric reads of (I-1)
R1	         8.800	[I-7] RPMH of (I-6)
R1	         8.697	[I-8] PPM of (I-6)
R1	       738.984	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        9781335 (100.0000%)	[A] Total raw reads
R2	        7703964 (78.7619%)	[B] Total reads after QC of (A)
R2		
R2	        7703964 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       13962653 (90.6199%)	[B-3] Total mapped reads of (B-2)x2
R2	        1445275 (9.3801%)	[B-4] Total unmapped reads of (B-2)x2
R2	        6914979 (89.7587%)	[F] Total mapped reads of (B-2)
R2	         788985 (10.2413%)	[G] Total unmapped reads of (B-2)
R2	         139185 (1.8067%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        7564779 (98.1933%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          10530 (0.1367%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1391.977	[I-3] RPMH of (I-1)
R2	      1366.829	[I-4] PPM of (I-1)
R2	     75654.704	[I-5] RPMU of (I-1)
R2	             59 (0.0008%)	[I-6] Total chimeric reads of (I-1)
R2	         7.799	[I-7] RPMH of (I-6)
R2	         7.658	[I-8] PPM of (I-6)
R2	       423.896	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1.8389	1.8172	154.4146	14	0	14	14.000	1213	ALL_R1	bacteria	Campylobacter	1.07e-09
<<
3.8091	3.7643	319.8588	29	0	29	29.000	2712	ALL_R1	fungi	Cryptococcus	3.59e-10
<<
1397.1604	1380.7178	117322.0096	10637	0	10637	10637.000	985916	ALL_R1	viral	Lymphocryptovirus	0.0
<<
4.6468	4.5628	252.5560	61	41	20	35.152	3938	ALL_R2	bacteria	Alcanivorax	1.92e-22
<<
3.9657	3.8941	215.5405	30	0	30	30.000	2977	ALL_R2	fungi	Cryptococcus	2.50e-11
<<
1374.2635	1349.4352	74691.9567	10396	0	10396	10396.000	942182	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.1313	0.1298	11.0296	1	0	1	1.000	38	R1U	bacteria	Chryseobacterium	n/a	
<<
8.5377	8.4372	716.9249	65	0	65	65.000	5842	R1U	viral	Lymphocryptovirus	n/a	
<<
0.1322	0.1298	7.1847	1	0	1	1.000	44	R2U	bacteria	Nocardia	n/a	
0.1322	0.1298	7.1847	1	0	1	1.000	36	R2U	bacteria	Clostridium	n/a	
<<
0.1322	0.1298	7.1847	1	0	1	1.000	36	R2U	fungi	Trichoderma	n/a	
<<
6.8740	6.7498	373.6035	52	0	52	52.000	4752	R2U	viral	Lymphocryptovirus	n/a