# 2020/08/29 16:45:37
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR741369	Replication ID
# SRP000547	Sample ID
# SRR741369_1.filt	Read1
# SRR741369_2.filt	Read2
R1	       79963967 (100.0000%)	[A] Total raw reads
R1	       77394782 (96.7871%)	[B] Total reads after QC of (A)
R1		
R1	       77394782 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	      141508941 (91.4202%)	[B-3] Total mapped reads of (B-2)x2
R1	       13280623 (8.5798%)	[B-4] Total unmapped reads of (B-2)x2
R1	       70911698 (91.6234%)	[F] Total mapped reads of (B-2)
R1	        6483084 (8.3766%)	[G] Total unmapped reads of (B-2)
R1	        1069417 (1.3818%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       76325365 (98.6182%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          98015 (0.1266%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1284.173	[I-3] RPMH of (I-1)
R1	      1266.429	[I-4] PPM of (I-1)
R1	     91652.742	[I-5] RPMU of (I-1)
R1	            133 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         1.743	[I-7] RPMH of (I-6)
R1	         1.718	[I-8] PPM of (I-6)
R1	       124.367	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       79963967 (100.0000%)	[A] Total raw reads
R2	       77394782 (96.7871%)	[B] Total reads after QC of (A)
R2		
R2	       77394782 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	      141508941 (91.4202%)	[B-3] Total mapped reads of (B-2)x2
R2	       13280623 (8.5798%)	[B-4] Total unmapped reads of (B-2)x2
R2	       70597243 (91.2171%)	[F] Total mapped reads of (B-2)
R2	        6797539 (8.7829%)	[G] Total unmapped reads of (B-2)
R2	        1203579 (1.5551%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       76191203 (98.4449%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          96905 (0.1252%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1271.866	[I-3] RPMH of (I-1)
R2	      1252.087	[I-4] PPM of (I-1)
R2	     80514.034	[I-5] RPMU of (I-1)
R2	            106 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         1.391	[I-7] RPMH of (I-6)
R2	         1.370	[I-8] PPM of (I-6)
R2	        88.071	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
3.5849	3.5354	255.8581	305	66	239	273.619	28436	ALL_R1	bacteria	Escherichia	0.0
<<
552.6996	545.0626	39446.7266	42185	0	42185	42185.000	4119001	ALL_R1	viral	Lymphocryptovirus	0.0
<<
3.4462	3.3926	218.1602	294	69	225	262.573	26975	ALL_R2	bacteria	Escherichia	0.0
<<
549.8273	541.2768	34806.1905	41892	0	41892	41892.000	4075511	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.4717	0.4651	33.6632	36	0	36	36.000	3080	R1U	viral	Lymphocryptovirus	n/a	
<<
0.2917	0.2872	18.4658	55	54	1	22.225	3571	R2U	bacteria	Acinetobacter	n/a	
0.0295	0.0291	1.8686	3	2	1	2.249	192	R2U	bacteria	Alcanivorax	n/a	
0.0213	0.0210	1.3493	2	1	1	1.624	101	R2U	bacteria	Tetrasphaera	n/a	
<<
0.4725	0.4651	29.9108	36	0	36	36.000	2195	R2U	viral	Lymphocryptovirus	n/a