# 2020/08/09 12:46:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR741362	Replication ID
# SRP001294	Sample ID
# SRR741362_1.filt	Read1
# SRR741362_2.filt	Read2
R1	       65764352 (100.0000%)	[A] Total raw reads
R1	       64351925 (97.8523%)	[B] Total reads after QC of (A)
R1		
R1	       64351925 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	      117469354 (91.2710%)	[B-3] Total mapped reads of (B-2)x2
R1	       11234496 (8.7290%)	[B-4] Total unmapped reads of (B-2)x2
R1	       58869483 (91.4805%)	[F] Total mapped reads of (B-2)
R1	        5482442 (8.5195%)	[G] Total unmapped reads of (B-2)
R1	        1155078 (1.7949%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       63196847 (98.2051%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	         110445 (0.1716%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1747.635	[I-3] RPMH of (I-1)
R1	      1716.266	[I-4] PPM of (I-1)
R1	     95616.919	[I-5] RPMU of (I-1)
R1	             54 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         0.855	[I-7] RPMH of (I-6)
R1	         0.839	[I-8] PPM of (I-6)
R1	        46.750	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       65764352 (100.0000%)	[A] Total raw reads
R2	       64351925 (97.8523%)	[B] Total reads after QC of (A)
R2		
R2	       64351925 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	      117469354 (91.2710%)	[B-3] Total mapped reads of (B-2)x2
R2	       11234496 (8.7290%)	[B-4] Total unmapped reads of (B-2)x2
R2	       58599871 (91.0616%)	[F] Total mapped reads of (B-2)
R2	        5752054 (8.9384%)	[G] Total unmapped reads of (B-2)
R2	        1241191 (1.9288%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       63110734 (98.0712%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	         109701 (0.1705%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1738.231	[I-3] RPMH of (I-1)
R2	      1704.704	[I-4] PPM of (I-1)
R2	     88383.657	[I-5] RPMU of (I-1)
R2	             37 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.586	[I-7] RPMH of (I-6)
R2	         0.575	[I-8] PPM of (I-6)
R2	        29.810	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
5.2836	5.1888	289.0783	343	21	322	333.908	33454	ALL_R1	bacteria	Escherichia	0.0
<<
427.3314	419.6611	23380.2393	27006	0	27006	27006.000	2664980	ALL_R1	viral	Lymphocryptovirus	0.0
<<
5.1781	5.0782	263.2882	336	25	311	326.791	31329	ALL_R2	bacteria	Escherichia	0.0
<<
510.0368	500.1995	25933.7999	81087	81086	1	32188.799	7725749	ALL_R2	viral	Phix174microvirus	n/a
426.3300	418.1072	21677.5661	26906	0	26906	26906.000	2623825	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.1108	0.1088	6.0602	7	0	7	7.000	705	R1U	viral	Lymphocryptovirus	n/a	
<<
0.0475	0.0466	2.4170	3	0	3	3.000	207	R2U	viral	Lymphocryptovirus	n/a