# 2020/08/07 08:29:34
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR035600	Replication ID
# SRP001294	Sample ID
# SRR035600_1.filt	Read1
# SRR035600_2.filt	Read2
R1	       13818936 (100.0000%)	[A] Total raw reads
R1	       11925637 (86.2992%)	[B] Total reads after QC of (A)
R1		
R1	       11925637 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       20255831 (84.9256%)	[B-3] Total mapped reads of (B-2)x2
R1	        3595443 (15.0744%)	[B-4] Total unmapped reads of (B-2)x2
R1	       10153488 (85.1400%)	[F] Total mapped reads of (B-2)
R1	        1772149 (14.8600%)	[G] Total unmapped reads of (B-2)
R1	        1063095 (8.9144%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       10862542 (91.0856%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           8268 (0.0693%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       761.148	[I-3] RPMH of (I-1)
R1	       693.296	[I-4] PPM of (I-1)
R1	      7777.292	[I-5] RPMU of (I-1)
R1	            116 (0.0010%)	[I-6] Total chimeric reads of (I-1)
R1	        10.679	[I-7] RPMH of (I-6)
R1	         9.727	[I-8] PPM of (I-6)
R1	       109.115	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       13818936 (100.0000%)	[A] Total raw reads
R2	       11925637 (86.2992%)	[B] Total reads after QC of (A)
R2		
R2	       11925637 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       20255831 (84.9256%)	[B-3] Total mapped reads of (B-2)x2
R2	        3595443 (15.0744%)	[B-4] Total unmapped reads of (B-2)x2
R2	       10102343 (84.7111%)	[F] Total mapped reads of (B-2)
R2	        1823294 (15.2889%)	[G] Total unmapped reads of (B-2)
R2	        1062864 (8.9124%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       10862773 (91.0876%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           8075 (0.0677%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       743.364	[I-3] RPMH of (I-1)
R2	       677.113	[I-4] PPM of (I-1)
R2	      7597.397	[I-5] RPMU of (I-1)
R2	             76 (0.0006%)	[I-6] Total chimeric reads of (I-1)
R2	         6.996	[I-7] RPMH of (I-6)
R2	         6.373	[I-8] PPM of (I-6)
R2	        71.505	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
0.8624	0.7855	8.8120	10	1	9	9.368	626	ALL_R1	bacteria	Alcanivorax	3.27e-06
<<
759.4907	691.7869	7760.3601	8250	0	8250	8250.000	586635	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1.2888	1.1739	13.1720	14	0	14	14.000	778	ALL_R2	bacteria	Alcanivorax	5.34e-16
<<
741.7075	675.6033	7580.4618	8057	0	8057	8057.000	544918	ALL_R2	viral	Lymphocryptovirus	0.0
<<
10.5868	9.6431	108.1747	115	0	115	115.000	8270	R1U	viral	Lymphocryptovirus	n/a	
<<
6.8123	6.2051	69.6232	74	0	74	74.000	5106	R2U	viral	Lymphocryptovirus	n/a