# 2020/08/21 13:30:08
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR257984	Replication ID
# SRP000547	Sample ID
# ERR257984_1.filt	Read1
# ERR257984_2.filt	Read2
R1	      119156206 (100.0000%)	[A] Total raw reads
R1	      116854469 (98.0683%)	[B] Total reads after QC of (A)
R1		
R1	      116854469 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	      216285097 (92.5446%)	[B-3] Total mapped reads of (B-2)x2
R1	       17423841 (7.4554%)	[B-4] Total unmapped reads of (B-2)x2
R1	      109181494 (93.4337%)	[F] Total mapped reads of (B-2)
R1	        7672975 (6.5663%)	[G] Total unmapped reads of (B-2)
R1	         887040 (0.7591%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	      115967429 (99.2409%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	         121951 (0.1044%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1051.597	[I-3] RPMH of (I-1)
R1	      1043.614	[I-4] PPM of (I-1)
R1	    137480.835	[I-5] RPMU of (I-1)
R1	            155 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         1.337	[I-7] RPMH of (I-6)
R1	         1.326	[I-8] PPM of (I-6)
R1	       174.739	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	      119156206 (100.0000%)	[A] Total raw reads
R2	      116854469 (98.0683%)	[B] Total reads after QC of (A)
R2		
R2	      116854469 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	      216285097 (92.5446%)	[B-3] Total mapped reads of (B-2)x2
R2	       17423841 (7.4554%)	[B-4] Total unmapped reads of (B-2)x2
R2	      107103603 (91.6555%)	[F] Total mapped reads of (B-2)
R2	        9750866 (8.3445%)	[G] Total unmapped reads of (B-2)
R2	        2307529 (1.9747%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	      114546940 (98.0253%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	         118853 (0.1017%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1037.592	[I-3] RPMH of (I-1)
R2	      1017.103	[I-4] PPM of (I-1)
R2	     51506.612	[I-5] RPMU of (I-1)
R2	            148 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         1.292	[I-7] RPMH of (I-6)
R2	         1.267	[I-8] PPM of (I-6)
R2	        64.138	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1050.9675	1042.9896	137398.5390	121878	0	121878	121878.000	12152224	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1036.3524	1015.8875	51445.0739	118711	0	118711	118711.000	11811634	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.0086	0.0086	1.1273	1	0	1	1.000	41	R1U	bacteria	Streptomyces	n/a	
0.0086	0.0086	1.1273	1	0	1	1.000	36	R1U	bacteria	Hymenobacter	n/a	
0.0086	0.0086	1.1273	1	0	1	1.000	100	R1U	bacteria	Tetrasphaera	n/a	
<<
1.3021	1.2922	170.2291	151	0	151	151.000	14621	R1U	viral	Lymphocryptovirus	n/a	
<<
0.8206	0.8044	40.7362	94	0	94	94.000	9110	R2U	viral	Lymphocryptovirus	n/a