# 2020/08/06 02:42:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR245048	Replication ID
# SRP001294	Sample ID
# ERR245048_1.filt	Read1
# ERR245048_2.filt	Read2
R1	        1906863 (100.0000%)	[A] Total raw reads
R1	        1865841 (97.8487%)	[B] Total reads after QC of (A)
R1		
R1	        1865841 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3441407 (92.2213%)	[B-3] Total mapped reads of (B-2)x2
R1	         290275 (7.7787%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1729964 (92.7177%)	[F] Total mapped reads of (B-2)
R1	         135877 (7.2823%)	[G] Total unmapped reads of (B-2)
R1	          13814 (0.7404%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1852027 (99.2596%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           1021 (0.0547%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       551.288	[I-3] RPMH of (I-1)
R1	       547.206	[I-4] PPM of (I-1)
R1	     73910.526	[I-5] RPMU of (I-1)
R1	              0 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R1	         0.000	[I-7] RPMH of (I-6)
R1	         0.000	[I-8] PPM of (I-6)
R1	         0.000	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1906863 (100.0000%)	[A] Total raw reads
R2	        1865841 (97.8487%)	[B] Total reads after QC of (A)
R2		
R2	        1865841 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3441407 (92.2213%)	[B-3] Total mapped reads of (B-2)x2
R2	         290275 (7.7787%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1711443 (91.7250%)	[F] Total mapped reads of (B-2)
R2	         154398 (8.2750%)	[G] Total unmapped reads of (B-2)
R2	          21269 (1.1399%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1844572 (98.8601%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	            991 (0.0531%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       537.252	[I-3] RPMH of (I-1)
R2	       531.128	[I-4] PPM of (I-1)
R2	     46593.634	[I-5] RPMU of (I-1)
R2	              1 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.542	[I-7] RPMH of (I-6)
R2	         0.536	[I-8] PPM of (I-6)
R2	        47.017	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
550.2080	546.1344	73765.7449	1019	0	1019	1019.000	101590	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1.0843	1.0719	94.0336	2	0	2	2.000	200	ALL_R2	bacteria	Alcanivorax	8.64e-04
<<
535.6256	529.5199	46452.5836	988	0	988	988.000	98615	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.5421	0.5360	47.0168	1	0	1	1.000	100	R2U	bacteria	Alcanivorax	n/a