# 2020/08/28 05:16:34
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR244894	Replication ID
# SRP000547	Sample ID
# ERR244894_1.filt	Read1
# ERR244894_2.filt	Read2
R1	        2112827 (100.0000%)	[A] Total raw reads
R1	        2070134 (97.9793%)	[B] Total reads after QC of (A)
R1		
R1	        2070134 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3831431 (92.5407%)	[B-3] Total mapped reads of (B-2)x2
R1	         308837 (7.4593%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1926226 (93.0484%)	[F] Total mapped reads of (B-2)
R1	         143908 (6.9516%)	[G] Total unmapped reads of (B-2)
R1	          21022 (1.0155%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        2049112 (98.9845%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           5833 (0.2818%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      2846.599	[I-3] RPMH of (I-1)
R1	      2817.692	[I-4] PPM of (I-1)
R1	    277471.221	[I-5] RPMU of (I-1)
R1	             15 (0.0007%)	[I-6] Total chimeric reads of (I-1)
R1	         7.320	[I-7] RPMH of (I-6)
R1	         7.246	[I-8] PPM of (I-6)
R1	       713.538	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2112827 (100.0000%)	[A] Total raw reads
R2	        2070134 (97.9793%)	[B] Total reads after QC of (A)
R2		
R2	        2070134 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3831431 (92.5407%)	[B-3] Total mapped reads of (B-2)x2
R2	         308837 (7.4593%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1905205 (92.0329%)	[F] Total mapped reads of (B-2)
R2	         164929 (7.9671%)	[G] Total unmapped reads of (B-2)
R2	          29141 (1.4077%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        2040993 (98.5923%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           5739 (0.2772%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      2811.867	[I-3] RPMH of (I-1)
R2	      2772.284	[I-4] PPM of (I-1)
R2	    196939.021	[I-5] RPMU of (I-1)
R2	             11 (0.0005%)	[I-6] Total chimeric reads of (I-1)
R2	         5.389	[I-7] RPMH of (I-6)
R2	         5.314	[I-8] PPM of (I-6)
R2	       377.475	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2846.1109	2817.2089	277423.6514	5832	0	5832	5832.000	581611	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2811.3766	2771.8012	196904.7047	5738	0	5738	5738.000	572040	ALL_R2	viral	Lymphocryptovirus	0.0
<<
7.3202	7.2459	713.5382	15	0	15	15.000	1442	R1U	viral	Lymphocryptovirus	n/a	
<<
5.3895	5.3137	377.4750	11	0	11	11.000	1098	R2U	viral	Lymphocryptovirus	n/a