# 2020/08/19 19:15:39
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243869	Replication ID
# SRP000547	Sample ID
# ERR243869_1.filt	Read1
# ERR243869_2.filt	Read2
R1	        2243501 (100.0000%)	[A] Total raw reads
R1	        2198999 (98.0164%)	[B] Total reads after QC of (A)
R1		
R1	        2198999 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        4012238 (91.2287%)	[B-3] Total mapped reads of (B-2)x2
R1	         385760 (8.7713%)	[B-4] Total unmapped reads of (B-2)x2
R1	        2024111 (92.0469%)	[F] Total mapped reads of (B-2)
R1	         174888 (7.9531%)	[G] Total unmapped reads of (B-2)
R1	          40279 (1.8317%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        2158720 (98.1683%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          21232 (0.9655%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      9835.458	[I-3] RPMH of (I-1)
R1	      9655.302	[I-4] PPM of (I-1)
R1	    527123.315	[I-5] RPMU of (I-1)
R1	             24 (0.0011%)	[I-6] Total chimeric reads of (I-1)
R1	        11.118	[I-7] RPMH of (I-6)
R1	        10.914	[I-8] PPM of (I-6)
R1	       595.844	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2243501 (100.0000%)	[A] Total raw reads
R2	        2198999 (98.0164%)	[B] Total reads after QC of (A)
R2		
R2	        2198999 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        4012238 (91.2287%)	[B-3] Total mapped reads of (B-2)x2
R2	         385760 (8.7713%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1988127 (90.4105%)	[F] Total mapped reads of (B-2)
R2	         210872 (9.5895%)	[G] Total unmapped reads of (B-2)
R2	          54398 (2.4738%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        2144601 (97.5262%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          20695 (0.9411%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      9649.814	[I-3] RPMH of (I-1)
R2	      9411.100	[I-4] PPM of (I-1)
R2	    380436.781	[I-5] RPMU of (I-1)
R2	             26 (0.0012%)	[I-6] Total chimeric reads of (I-1)
R2	        12.124	[I-7] RPMH of (I-6)
R2	        11.824	[I-8] PPM of (I-6)
R2	       477.959	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
9834.5316	9654.3927	527073.6612	21230	0	21230	21230.000	2117404	ALL_R1	viral	Lymphocryptovirus	0.0
<<
9648.4148	9409.7360	380381.6317	20692	0	20692	20692.000	2064264	ALL_R2	viral	Lymphocryptovirus	0.0
<<
11.1177	10.9141	595.8440	24	0	24	24.000	2398	R1U	viral	Lymphocryptovirus	n/a	
<<
12.1235	11.8236	477.9587	26	0	26	26.000	2593	R2U	viral	Lymphocryptovirus	n/a