# 2020/08/27 14:42:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243853	Replication ID
# SRP000547	Sample ID
# ERR243853_1.filt	Read1
# ERR243853_2.filt	Read2
R1	        1860753 (100.0000%)	[A] Total raw reads
R1	        1816764 (97.6360%)	[B] Total reads after QC of (A)
R1		
R1	        1816764 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3356695 (92.3812%)	[B-3] Total mapped reads of (B-2)x2
R1	         276833 (7.6188%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1689947 (93.0196%)	[F] Total mapped reads of (B-2)
R1	         126817 (6.9804%)	[G] Total unmapped reads of (B-2)
R1	          18207 (1.0022%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1798557 (98.9978%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           4915 (0.2705%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      2732.746	[I-3] RPMH of (I-1)
R1	      2705.360	[I-4] PPM of (I-1)
R1	    269951.118	[I-5] RPMU of (I-1)
R1	             11 (0.0006%)	[I-6] Total chimeric reads of (I-1)
R1	         6.116	[I-7] RPMH of (I-6)
R1	         6.055	[I-8] PPM of (I-6)
R1	       604.163	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1860753 (100.0000%)	[A] Total raw reads
R2	        1816764 (97.6360%)	[B] Total reads after QC of (A)
R2		
R2	        1816764 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3356695 (92.3812%)	[B-3] Total mapped reads of (B-2)x2
R2	         276833 (7.6188%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1666748 (91.7427%)	[F] Total mapped reads of (B-2)
R2	         150016 (8.2573%)	[G] Total unmapped reads of (B-2)
R2	          26678 (1.4684%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1790086 (98.5316%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           4800 (0.2642%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      2681.435	[I-3] RPMH of (I-1)
R2	      2642.060	[I-4] PPM of (I-1)
R2	    179923.532	[I-5] RPMU of (I-1)
R2	              5 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R2	         2.793	[I-7] RPMH of (I-6)
R2	         2.752	[I-8] PPM of (I-6)
R2	       187.420	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2731.6343	2704.2588	269841.2698	4913	0	4913	4913.000	490294	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2679.2009	2639.8586	179773.5962	4796	0	4796	4796.000	478578	ALL_R2	viral	Lymphocryptovirus	0.0
<<
6.1160	6.0547	604.1632	11	0	11	11.000	1096	R1U	viral	Lymphocryptovirus	n/a	
<<
0.5586	0.5504	37.4841	1	0	1	1.000	37	R2U	bacteria	Roseburia	n/a	
<<
2.2345	2.2017	149.9363	4	0	4	4.000	400	R2U	viral	Lymphocryptovirus	n/a