# 2020/08/22 20:30:05
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243454	Replication ID
# SRP000547	Sample ID
# ERR243454_1.filt	Read1
# ERR243454_2.filt	Read2
R1	        2265392 (100.0000%)	[A] Total raw reads
R1	        2218370 (97.9243%)	[B] Total reads after QC of (A)
R1		
R1	        2218370 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        4110962 (92.6573%)	[B-3] Total mapped reads of (B-2)x2
R1	         325778 (7.3427%)	[B-4] Total unmapped reads of (B-2)x2
R1	        2066707 (93.1633%)	[F] Total mapped reads of (B-2)
R1	         151663 (6.8367%)	[G] Total unmapped reads of (B-2)
R1	          22245 (1.0028%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        2196125 (98.9972%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           6232 (0.2809%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      2837.726	[I-3] RPMH of (I-1)
R1	      2809.270	[I-4] PPM of (I-1)
R1	    280152.843	[I-5] RPMU of (I-1)
R1	             15 (0.0007%)	[I-6] Total chimeric reads of (I-1)
R1	         6.830	[I-7] RPMH of (I-6)
R1	         6.762	[I-8] PPM of (I-6)
R1	       674.309	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2265392 (100.0000%)	[A] Total raw reads
R2	        2218370 (97.9243%)	[B] Total reads after QC of (A)
R2		
R2	        2218370 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        4110962 (92.6573%)	[B-3] Total mapped reads of (B-2)x2
R2	         325778 (7.3427%)	[B-4] Total unmapped reads of (B-2)x2
R2	        2044255 (92.1512%)	[F] Total mapped reads of (B-2)
R2	         174115 (7.8488%)	[G] Total unmapped reads of (B-2)
R2	          30507 (1.3752%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        2187863 (98.6248%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           6189 (0.2790%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      2828.788	[I-3] RPMH of (I-1)
R2	      2789.886	[I-4] PPM of (I-1)
R2	    202871.472	[I-5] RPMU of (I-1)
R2	              8 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R2	         3.657	[I-7] RPMH of (I-6)
R2	         3.606	[I-8] PPM of (I-6)
R2	       262.235	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2836.3595	2807.9175	280017.9816	6229	0	6229	6229.000	621374	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2826.9595	2788.0831	202740.3547	6185	0	6185	6185.000	616806	ALL_R2	viral	Lymphocryptovirus	0.0
<<
6.8302	6.7617	674.3088	15	0	15	15.000	1440	R1U	viral	Lymphocryptovirus	n/a	
<<
3.6565	3.6063	262.2349	8	0	8	8.000	800	R2U	viral	Lymphocryptovirus	n/a