# 2020/08/22 18:48:06
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243370	Replication ID
# SRP000547	Sample ID
# ERR243370_1.filt	Read1
# ERR243370_2.filt	Read2
R1	        2257806 (100.0000%)	[A] Total raw reads
R1	        2209900 (97.8782%)	[B] Total reads after QC of (A)
R1		
R1	        2209900 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        4096199 (92.6784%)	[B-3] Total mapped reads of (B-2)x2
R1	         323601 (7.3216%)	[B-4] Total unmapped reads of (B-2)x2
R1	        2059218 (93.1815%)	[F] Total mapped reads of (B-2)
R1	         150682 (6.8185%)	[G] Total unmapped reads of (B-2)
R1	          21818 (0.9873%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        2188082 (99.0127%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           6152 (0.2784%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      2811.595	[I-3] RPMH of (I-1)
R1	      2783.836	[I-4] PPM of (I-1)
R1	    281969.016	[I-5] RPMU of (I-1)
R1	              8 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R1	         3.656	[I-7] RPMH of (I-6)
R1	         3.620	[I-8] PPM of (I-6)
R1	       366.670	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2257806 (100.0000%)	[A] Total raw reads
R2	        2209900 (97.8782%)	[B] Total reads after QC of (A)
R2		
R2	        2209900 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        4096199 (92.6784%)	[B-3] Total mapped reads of (B-2)x2
R2	         323601 (7.3216%)	[B-4] Total unmapped reads of (B-2)x2
R2	        2036981 (92.1753%)	[F] Total mapped reads of (B-2)
R2	         172919 (7.8247%)	[G] Total unmapped reads of (B-2)
R2	          30241 (1.3684%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        2179659 (98.6316%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           6136 (0.2777%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      2815.119	[I-3] RPMH of (I-1)
R2	      2776.596	[I-4] PPM of (I-1)
R2	    202903.343	[I-5] RPMU of (I-1)
R2	             12 (0.0005%)	[I-6] Total chimeric reads of (I-1)
R2	         5.505	[I-7] RPMH of (I-6)
R2	         5.430	[I-8] PPM of (I-6)
R2	       396.812	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2811.5948	2783.8364	281969.0164	6152	0	6152	6152.000	613614	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2814.2017	2775.6912	202837.2078	6134	0	6134	6134.000	612015	ALL_R2	viral	Lymphocryptovirus	0.0
<<
3.6562	3.6201	366.6697	8	0	8	8.000	800	R1U	viral	Lymphocryptovirus	n/a	
<<
5.5054	5.4301	396.8123	12	0	12	12.000	1194	R2U	viral	Lymphocryptovirus	n/a