# 2020/08/05 16:13:34
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243022	Replication ID
# SRP001294	Sample ID
# ERR243022_1.filt	Read1
# ERR243022_2.filt	Read2
R1	        2005072 (100.0000%)	[A] Total raw reads
R1	        1959294 (97.7169%)	[B] Total reads after QC of (A)
R1		
R1	        1959294 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3607400 (92.0587%)	[B-3] Total mapped reads of (B-2)x2
R1	         311188 (7.9413%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1817574 (92.7668%)	[F] Total mapped reads of (B-2)
R1	         141720 (7.2332%)	[G] Total unmapped reads of (B-2)
R1	          14400 (0.7350%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1944894 (99.2650%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           1055 (0.0538%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       542.446	[I-3] RPMH of (I-1)
R1	       538.459	[I-4] PPM of (I-1)
R1	     73263.889	[I-5] RPMU of (I-1)
R1	              2 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         1.028	[I-7] RPMH of (I-6)
R1	         1.021	[I-8] PPM of (I-6)
R1	       138.889	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2005072 (100.0000%)	[A] Total raw reads
R2	        1959294 (97.7169%)	[B] Total reads after QC of (A)
R2		
R2	        1959294 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3607400 (92.0587%)	[B-3] Total mapped reads of (B-2)x2
R2	         311188 (7.9413%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1789826 (91.3506%)	[F] Total mapped reads of (B-2)
R2	         169468 (8.6494%)	[G] Total unmapped reads of (B-2)
R2	          25905 (1.3222%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1933389 (98.6778%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           1028 (0.0525%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       531.709	[I-3] RPMH of (I-1)
R2	       524.679	[I-4] PPM of (I-1)
R2	     39683.459	[I-5] RPMU of (I-1)
R2	              2 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         1.034	[I-7] RPMH of (I-6)
R2	         1.021	[I-8] PPM of (I-6)
R2	        77.205	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
540.9035	536.9281	73055.5556	1052	0	1052	1052.000	104942	ALL_R1	viral	Lymphocryptovirus	0.0
<<
529.6399	522.6372	39529.0484	1024	0	1024	1024.000	102113	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.0283	1.0208	138.8889	2	0	2	2.000	199	R1U	viral	Lymphocryptovirus	n/a	
<<
0.5172	0.5104	38.6026	1	0	1	1.000	100	R2U	viral	Lymphocryptovirus	n/a