# 2020/09/03 17:45:05
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR239432	Replication ID
# SRP000542	Sample ID
# ERR239432_1.filt	Read1
# ERR239432_2.filt	Read2
R1	        8578224 (100.0000%)	[A] Total raw reads
R1	        8424445 (98.2073%)	[B] Total reads after QC of (A)
R1		
R1	        8424445 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       15529661 (92.1702%)	[B-3] Total mapped reads of (B-2)x2
R1	        1319229 (7.8298%)	[B-4] Total unmapped reads of (B-2)x2
R1	        7802941 (92.6226%)	[F] Total mapped reads of (B-2)
R1	         621504 (7.3774%)	[G] Total unmapped reads of (B-2)
R1	          93551 (1.1105%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        8330894 (98.8895%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          32266 (0.3830%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      3873.054	[I-3] RPMH of (I-1)
R1	      3830.045	[I-4] PPM of (I-1)
R1	    344902.780	[I-5] RPMU of (I-1)
R1	             27 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R1	         3.241	[I-7] RPMH of (I-6)
R1	         3.205	[I-8] PPM of (I-6)
R1	       288.613	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        8578224 (100.0000%)	[A] Total raw reads
R2	        8424445 (98.2073%)	[B] Total reads after QC of (A)
R2		
R2	        8424445 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       15529661 (92.1702%)	[B-3] Total mapped reads of (B-2)x2
R2	        1319229 (7.8298%)	[B-4] Total unmapped reads of (B-2)x2
R2	        7726720 (91.7179%)	[F] Total mapped reads of (B-2)
R2	         697725 (8.2821%)	[G] Total unmapped reads of (B-2)
R2	         124301 (1.4755%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        8300144 (98.5245%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          31908 (0.3788%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      3844.271	[I-3] RPMH of (I-1)
R2	      3787.549	[I-4] PPM of (I-1)
R2	    256699.463	[I-5] RPMU of (I-1)
R2	             28 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R2	         3.373	[I-7] RPMH of (I-6)
R2	         3.324	[I-8] PPM of (I-6)
R2	       225.260	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
3871.8534	3828.8576	344795.8867	32256	0	32256	32256.000	3213522	ALL_R1	viral	Lymphocryptovirus	0.0
<<
3843.3068	3786.5996	256635.1035	31900	0	31900	31900.000	3178485	ALL_R2	viral	Lymphocryptovirus	0.0
<<
3.2409	3.2050	288.6126	27	0	27	27.000	2682	R1U	viral	Lymphocryptovirus	n/a	
<<
3.3734	3.3237	225.2597	28	0	28	28.000	2792	R2U	viral	Lymphocryptovirus	n/a