# 2020/09/02 12:52:36
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR234326	Replication ID
# SRP000547	Sample ID
# ERR234326_1.filt	Read1
# ERR234326_2.filt	Read2
R1	      119395294 (100.0000%)	[A] Total raw reads
R1	      115616824 (96.8353%)	[B] Total reads after QC of (A)
R1		
R1	      115616824 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	      213521627 (92.3402%)	[B-3] Total mapped reads of (B-2)x2
R1	       17712021 (7.6598%)	[B-4] Total unmapped reads of (B-2)x2
R1	      107702122 (93.1544%)	[F] Total mapped reads of (B-2)
R1	        7914702 (6.8456%)	[G] Total unmapped reads of (B-2)
R1	        1110381 (0.9604%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	      114506443 (99.0396%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	         243232 (0.2104%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      2124.177	[I-3] RPMH of (I-1)
R1	      2103.777	[I-4] PPM of (I-1)
R1	    219052.740	[I-5] RPMU of (I-1)
R1	           1410 (0.0012%)	[I-6] Total chimeric reads of (I-1)
R1	        12.314	[I-7] RPMH of (I-6)
R1	        12.196	[I-8] PPM of (I-6)
R1	      1269.834	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	      119395294 (100.0000%)	[A] Total raw reads
R2	      115616824 (96.8353%)	[B] Total reads after QC of (A)
R2		
R2	      115616824 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	      213521627 (92.3402%)	[B-3] Total mapped reads of (B-2)x2
R2	       17712021 (7.6598%)	[B-4] Total unmapped reads of (B-2)x2
R2	      105819505 (91.5260%)	[F] Total mapped reads of (B-2)
R2	        9797319 (8.4740%)	[G] Total unmapped reads of (B-2)
R2	        1739718 (1.5047%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	      113877106 (98.4953%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	         239200 (0.2069%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      2100.510	[I-3] RPMH of (I-1)
R2	      2068.903	[I-4] PPM of (I-1)
R2	    137493.548	[I-5] RPMU of (I-1)
R2	           1355 (0.0012%)	[I-6] Total chimeric reads of (I-1)
R2	        11.899	[I-7] RPMH of (I-6)
R2	        11.720	[I-8] PPM of (I-6)
R2	       778.862	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2123.1993	2102.8082	218951.8733	243120	0	243120	243120.000	23676696	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2098.6132	2067.0348	137369.3898	238984	0	238984	238984.000	22895118	ALL_R2	viral	Lymphocryptovirus	0.0
<<
12.3050	12.1868	1268.9338	1409	0	1409	1409.000	136436	R1U	viral	Lymphocryptovirus	n/a	
<<
0.0471	0.0464	3.0856	6	1	5	5.368	514	R2U	bacteria	Alcanivorax	n/a	
<<
0.0176	0.0173	1.1496	2	0	2	2.000	190	R2U	fungi	Aspergillus	n/a	
<<
11.6880	11.5122	765.0665	1331	0	1331	1331.000	127247	R2U	viral	Lymphocryptovirus	n/a