# 2020/08/06 04:38:03
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR018523	Replication ID
# SRP001294	Sample ID
# ERR018523_1.filt	Read1
# ERR018523_2.filt	Read2
R1	        4531202 (100.0000%)	[A] Total raw reads
R1	        4427201 (97.7048%)	[B] Total reads after QC of (A)
R1		
R1	        4427201 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        7692723 (86.8802%)	[B-3] Total mapped reads of (B-2)x2
R1	        1161679 (13.1198%)	[B-4] Total unmapped reads of (B-2)x2
R1	        3862848 (87.2526%)	[F] Total mapped reads of (B-2)
R1	         564353 (12.7474%)	[G] Total unmapped reads of (B-2)
R1	         128333 (2.8987%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        4298868 (97.1013%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	            330 (0.0075%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	        76.764	[I-3] RPMH of (I-1)
R1	        74.539	[I-4] PPM of (I-1)
R1	      2571.435	[I-5] RPMU of (I-1)
R1	              1 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R1	         0.233	[I-7] RPMH of (I-6)
R1	         0.226	[I-8] PPM of (I-6)
R1	         7.792	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        4531202 (100.0000%)	[A] Total raw reads
R2	        4427201 (97.7048%)	[B] Total reads after QC of (A)
R2		
R2	        4427201 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        7692723 (86.8802%)	[B-3] Total mapped reads of (B-2)x2
R2	        1161679 (13.1198%)	[B-4] Total unmapped reads of (B-2)x2
R2	        3829875 (86.5078%)	[F] Total mapped reads of (B-2)
R2	         597326 (13.4922%)	[G] Total unmapped reads of (B-2)
R2	         163319 (3.6890%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        4263882 (96.3110%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	            339 (0.0077%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	        79.505	[I-3] RPMH of (I-1)
R2	        76.572	[I-4] PPM of (I-1)
R2	      2075.692	[I-5] RPMU of (I-1)
R2	              4 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.938	[I-7] RPMH of (I-6)
R2	         0.903	[I-8] PPM of (I-6)
R2	        24.492	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1.2720	1.2351	42.6079	14	13	1	5.468	1422	ALL_R1	bacteria	Salmonella	1.76e-07
0.4652	0.4518	15.5845	2	0	2	2.000	197	ALL_R1	bacteria	Streptococcus	7.01e-18
0.2326	0.2259	7.7922	1	0	1	1.000	108	ALL_R1	bacteria	Clostridioides	9.56e-12
<<
68.3901	66.4076	2290.9150	294	0	294	294.000	31328	ALL_R1	viral	Lymphocryptovirus	0.0
1.9045	1.8492	63.7950	16	13	3	8.187	1630	ALL_R1	viral	Mastadenovirus	7.37e-64
<<
3.7009	3.5643	96.6207	28	20	8	15.780	2938	ALL_R2	bacteria	Streptomyces	0.0
0.6515	0.6275	17.0097	4	2	2	2.778	424	ALL_R2	bacteria	Streptococcus	5.36e-17
0.2345	0.2259	6.1230	1	0	1	1.000	44	ALL_R2	bacteria	Psychroflexus	2.06e-08
0.2345	0.2259	6.1230	1	0	1	1.000	108	ALL_R2	bacteria	Clostridioides	3.47e-11
0.2345	0.2259	6.1230	1	0	1	1.000	107	ALL_R2	bacteria	Alcanivorax	3.95e-07
<<
0.2345	0.2259	6.1230	1	0	1	1.000	106	ALL_R2	fungi	Mitosporidium	2.06e-08
<<
69.6548	67.0853	1818.5269	297	0	297	297.000	31728	ALL_R2	viral	Lymphocryptovirus	0.0
2.3978	2.3094	62.6014	20	16	4	10.224	2006	ALL_R2	viral	Mastadenovirus	2.76e-108
0.7036	0.6776	18.3690	3	0	3	3.000	211	ALL_R2	viral	Lambdavirus	6.67e-23
<<
0.2326	0.2259	7.7922	1	0	1	1.000	107	R1U	viral	Lymphocryptovirus	n/a	
<<
0.2345	0.2259	6.1230	1	0	1	1.000	106	R2U	fungi	Mitosporidium	n/a