# 2020/08/15 13:03:03
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR016272	Replication ID
# SRP000808	Sample ID
# ERR016272_1.filt	Read1
# ERR016272_2.filt	Read2
R1	       34104985 (100.0000%)	[A] Total raw reads
R1	       27877939 (81.7415%)	[B] Total reads after QC of (A)
R1		
R1	       27877939 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       51496454 (92.3606%)	[B-3] Total mapped reads of (B-2)x2
R1	        4259424 (7.6394%)	[B-4] Total unmapped reads of (B-2)x2
R1	       25792679 (92.5200%)	[F] Total mapped reads of (B-2)
R1	        2085260 (7.4800%)	[G] Total unmapped reads of (B-2)
R1	         244020 (0.8753%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       27633919 (99.1247%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          18339 (0.0658%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       663.641	[I-3] RPMH of (I-1)
R1	       657.832	[I-4] PPM of (I-1)
R1	     75153.676	[I-5] RPMU of (I-1)
R1	            165 (0.0006%)	[I-6] Total chimeric reads of (I-1)
R1	         5.971	[I-7] RPMH of (I-6)
R1	         5.919	[I-8] PPM of (I-6)
R1	       676.174	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       34104985 (100.0000%)	[A] Total raw reads
R2	       27877939 (81.7415%)	[B] Total reads after QC of (A)
R2		
R2	       27877939 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       51496454 (92.3606%)	[B-3] Total mapped reads of (B-2)x2
R2	        4259424 (7.6394%)	[B-4] Total unmapped reads of (B-2)x2
R2	       25703775 (92.2011%)	[F] Total mapped reads of (B-2)
R2	        2174164 (7.7989%)	[G] Total unmapped reads of (B-2)
R2	         261091 (0.9366%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       27616848 (99.0634%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          17953 (0.0644%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       650.074	[I-3] RPMH of (I-1)
R2	       643.986	[I-4] PPM of (I-1)
R2	     68761.466	[I-5] RPMU of (I-1)
R2	            134 (0.0005%)	[I-6] Total chimeric reads of (I-1)
R2	         4.852	[I-7] RPMH of (I-6)
R2	         4.807	[I-8] PPM of (I-6)
R2	       513.231	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
661.5059	655.7156	74911.8925	18280	0	18280	18280.000	1477873	ALL_R1	viral	Lymphocryptovirus	0.0
<<
647.9378	641.8695	68535.4915	17894	0	17894	17894.000	1433297	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.0724	0.0717	8.1960	2	0	2	2.000	133	R1U	bacteria	Rhizobium	n/a	
<<
5.8985	5.8469	667.9780	163	0	163	163.000	13194	R1U	viral	Lymphocryptovirus	n/a	
<<
4.8521	4.8067	513.2310	134	0	134	134.000	10746	R2U	viral	Lymphocryptovirus	n/a