# 2020/08/15 03:47:29
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR016261	Replication ID
# SRP000808	Sample ID
# ERR016261_1.filt	Read1
# ERR016261_2.filt	Read2
R1	       38147910 (100.0000%)	[A] Total raw reads
R1	       30670043 (80.3977%)	[B] Total reads after QC of (A)
R1		
R1	       30670043 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       56654511 (92.3613%)	[B-3] Total mapped reads of (B-2)x2
R1	        4685575 (7.6387%)	[B-4] Total unmapped reads of (B-2)x2
R1	       28356813 (92.4577%)	[F] Total mapped reads of (B-2)
R1	        2313230 (7.5423%)	[G] Total unmapped reads of (B-2)
R1	         214553 (0.6996%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       30455490 (99.3004%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          17592 (0.0574%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       577.630	[I-3] RPMH of (I-1)
R1	       573.589	[I-4] PPM of (I-1)
R1	     81993.727	[I-5] RPMU of (I-1)
R1	            174 (0.0006%)	[I-6] Total chimeric reads of (I-1)
R1	         5.713	[I-7] RPMH of (I-6)
R1	         5.673	[I-8] PPM of (I-6)
R1	       810.988	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       38147910 (100.0000%)	[A] Total raw reads
R2	       30670043 (80.3977%)	[B] Total reads after QC of (A)
R2		
R2	       30670043 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       56654511 (92.3613%)	[B-3] Total mapped reads of (B-2)x2
R2	        4685575 (7.6387%)	[B-4] Total unmapped reads of (B-2)x2
R2	       28297698 (92.2649%)	[F] Total mapped reads of (B-2)
R2	        2372345 (7.7351%)	[G] Total unmapped reads of (B-2)
R2	         223948 (0.7302%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       30446095 (99.2698%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          17432 (0.0568%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       572.553	[I-3] RPMH of (I-1)
R2	       568.372	[I-4] PPM of (I-1)
R2	     77839.498	[I-5] RPMU of (I-1)
R2	            123 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R2	         4.040	[I-7] RPMH of (I-6)
R2	         4.010	[I-8] PPM of (I-6)
R2	       549.235	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
575.8896	571.8610	81746.7013	17539	0	17539	17539.000	1508418	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1.2035	1.1947	163.6139	60	37	23	36.641	3973	ALL_R2	bacteria	Alcanivorax	3.03e-10
<<
570.0567	565.8942	77500.1340	17356	0	17356	17356.000	1456632	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.0692	0.0687	9.8158	4	3	1	2.106	316	R1U	bacteria	Alcanivorax	n/a	
<<
5.5819	5.5429	792.3450	170	0	170	170.000	14400	R1U	viral	Lymphocryptovirus	n/a	
<<
0.1107	0.1098	15.0437	4	1	3	3.369	240	R2U	bacteria	Alcanivorax	n/a	
<<
3.8757	3.8474	526.9080	118	0	118	118.000	9759	R2U	viral	Lymphocryptovirus	n/a