# 2020/09/01 22:03:08 # HUMAN Target (Host) organism # DNA Sequencing source # ERR015990 Replication ID # SRP000547 Sample ID # ERR015990_1.filt Read1 # ERR015990_2.filt Read2 R1 13885133 (100.0000%) [A] Total raw reads R1 13787198 (99.2947%) [B] Total reads after QC of (A) R1 R1 13787198 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R1 23200697 (84.1386%) [B-3] Total mapped reads of (B-2)x2 R1 4373699 (15.8614%) [B-4] Total unmapped reads of (B-2)x2 R1 11659895 (84.5704%) [F] Total mapped reads of (B-2) R1 2127303 (15.4296%) [G] Total unmapped reads of (B-2) R1 550353 (3.9918%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R1 13236845 (96.0082%) [J] Total mapped reads to host genome ( (B-2)-H) R1 84471 (0.6127%) [I-1] Total mapped reads of (H) to exo. genomes R1 6381.506 [I-3] RPMH of (I-1) R1 6126.771 [I-4] PPM of (I-1) R1 153485.127 [I-5] RPMU of (I-1) R1 11 (0.0001%) [I-6] Total chimeric reads of (I-1) R1 0.831 [I-7] RPMH of (I-6) R1 0.798 [I-8] PPM of (I-6) R1 19.987 [I-9] RPMU of (I-6) R1 ## ----------------------------------------- R2 13885133 (100.0000%) [A] Total raw reads R2 13787198 (99.2947%) [B] Total reads after QC of (A) R2 R2 13787198 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R2 23200697 (84.1386%) [B-3] Total mapped reads of (B-2)x2 R2 4373699 (15.8614%) [B-4] Total unmapped reads of (B-2)x2 R2 11540802 (83.7067%) [F] Total mapped reads of (B-2) R2 2246396 (16.2933%) [G] Total unmapped reads of (B-2) R2 602155 (4.3675%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R2 13185043 (95.6325%) [J] Total mapped reads to host genome ( (B-2)-H) R2 82894 (0.6012%) [I-1] Total mapped reads of (H) to exo. genomes R2 6286.972 [I-3] RPMH of (I-1) R2 6012.389 [I-4] PPM of (I-1) R2 137662.230 [I-5] RPMU of (I-1) R2 16 (0.0001%) [I-6] Total chimeric reads of (I-1) R2 1.213 [I-7] RPMH of (I-6) R2 1.160 [I-8] PPM of (I-6) R2 26.571 [I-9] RPMU of (I-6) R2 ## ----------------------------------------- ##=============================================## # List threshold of RPMU > 1 # List threshold of P-value < 0.001 # RPMH PPM RPMU Total Multi_Reads(All_ExoGenus) Uniq_Reads(This_Genus) wTotal Sum_ReadLength Type Exo Genus Pvalue(Uniq) 39.3670 37.7956 946.8378 840 332 508 521.095 42251 ALL_R1 bacteria Serratia 0.0 9.4682 9.0902 227.7248 401 277 124 125.329 20238 ALL_R1 bacteria Cutibacterium 4.50e-68 4.0040 3.8441 96.3018 71 24 47 53.000 3566 ALL_R1 bacteria Stenotrophomonas 5.54e-04 << 6219.9112 5971.6267 149598.5304 82332 0 82332 82332.000 4164609 ALL_R1 viral Lymphocryptovirus 0.0 << 39.1394 37.4300 857.0136 665 164 501 516.055 33331 ALL_R2 bacteria Serratia 0.0 8.8300 8.4444 193.3456 222 106 116 116.424 11147 ALL_R2 bacteria Cutibacterium 9.01e-60 4.3092 4.1210 94.3561 72 20 52 56.817 3587 ALL_R2 bacteria Stenotrophomonas 3.37e-06 << 6142.5662 5874.2900 134500.2533 80990 0 80990 80990.000 4083222 ALL_R2 viral Lymphocryptovirus 0.0 << 0.4065 0.3903 9.7774 6 1 5 5.381 306 R1U bacteria Alcanivorax n/a 0.0755 0.0725 1.8170 1 0 1 1.000 51 R1U bacteria Nocardia n/a 0.0755 0.0725 1.8170 1 0 1 1.000 51 R1U bacteria Eubacterium n/a 0.0755 0.0725 1.8170 1 0 1 1.000 40 R1U bacteria Lactobacillus n/a 0.0755 0.0725 1.8170 1 0 1 1.000 36 R1U bacteria Bordetella n/a << 0.0755 0.0725 1.8170 1 0 1 1.000 39 R1U fungi Diplodia n/a << 0.1616 0.1546 3.5390 4 3 1 2.131 204 R2U bacteria Alcanivorax n/a 0.0758 0.0725 1.6607 1 0 1 1.000 51 R2U bacteria Gemmata n/a 0.0758 0.0725 1.6607 1 0 1 1.000 45 R2U bacteria Ideonella n/a 0.0758 0.0725 1.6607 1 0 1 1.000 37 R2U bacteria Hymenobacter n/a 0.0758 0.0725 1.6607 1 0 1 1.000 36 R2U bacteria Methylobacterium n/a 0.0758 0.0725 1.6607 1 0 1 1.000 36 R2U bacteria Kitasatospora n/a << 0.0758 0.0725 1.6607 1 0 1 1.000 51 R2U fungi Mitosporidium n/a 0.0758 0.0725 1.6607 1 0 1 1.000 39 R2U fungi Setosphaeria n/a 0.0758 0.0725 1.6607 1 0 1 1.000 36 R2U fungi Sclerotinia n/a << 0.2275 0.2176 4.9821 3 0 3 3.000 152 R2U viral Lymphocryptovirus n/a