# 2020/09/01 06:44:34
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR006265	Replication ID
# SRP000547	Sample ID
# ERR006265_1.filt	Read1
# ERR006265_2.filt	Read2
R1	        6351587 (100.0000%)	[A] Total raw reads
R1	        3285220 (51.7228%)	[B] Total reads after QC of (A)
R1		
R1	        3285220 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        4940502 (75.1929%)	[B-3] Total mapped reads of (B-2)x2
R1	        1629938 (24.8071%)	[B-4] Total unmapped reads of (B-2)x2
R1	        2486910 (75.7000%)	[F] Total mapped reads of (B-2)
R1	         798310 (24.3000%)	[G] Total unmapped reads of (B-2)
R1	         258751 (7.8762%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        3026469 (92.1238%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          11477 (0.3494%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      3792.208	[I-3] RPMH of (I-1)
R1	      3493.526	[I-4] PPM of (I-1)
R1	     44355.384	[I-5] RPMU of (I-1)
R1	             33 (0.0010%)	[I-6] Total chimeric reads of (I-1)
R1	        10.904	[I-7] RPMH of (I-6)
R1	        10.045	[I-8] PPM of (I-6)
R1	       127.536	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        6351587 (100.0000%)	[A] Total raw reads
R2	        3285220 (51.7228%)	[B] Total reads after QC of (A)
R2		
R2	        3285220 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        4940502 (75.1929%)	[B-3] Total mapped reads of (B-2)x2
R2	        1629938 (24.8071%)	[B-4] Total unmapped reads of (B-2)x2
R2	        2453592 (74.6858%)	[F] Total mapped reads of (B-2)
R2	         831628 (25.3142%)	[G] Total unmapped reads of (B-2)
R2	         263351 (8.0162%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        3021869 (91.9838%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          11357 (0.3457%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      3758.270	[I-3] RPMH of (I-1)
R2	      3456.998	[I-4] PPM of (I-1)
R2	     43124.955	[I-5] RPMU of (I-1)
R2	             37 (0.0011%)	[I-6] Total chimeric reads of (I-1)
R2	        12.244	[I-7] RPMH of (I-6)
R2	        11.263	[I-8] PPM of (I-6)
R2	       140.497	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
42.5889	39.2345	498.1391	257	208	49	128.894	9252	ALL_R1	bacteria	Eubacterium	5.80e-45
41.2365	37.9886	482.3208	198	76	122	124.801	7128	ALL_R1	bacteria	Serratia	0.0
31.7201	29.2218	371.0131	220	203	17	96.000	7920	ALL_R1	bacteria	Alcanivorax	1.52e-11
7.6270	7.0263	89.2093	77	54	23	23.083	2772	ALL_R1	bacteria	Cutibacterium	9.77e-09
3.4334	3.1630	40.1583	11	1	10	10.391	396	ALL_R1	bacteria	Acidovorax	7.54e-07
<<
11.5646	10.6538	135.2652	35	0	35	35.000	1260	ALL_R1	fungi	Malassezia	3.50e-79
<<
3564.0755	3283.3612	41687.0428	10789	4	10785	10786.564	388404	ALL_R1	viral	Lymphocryptovirus	0.0
<<
40.5822	37.3290	465.6675	257	218	39	122.634	9252	ALL_R2	bacteria	Eubacterium	1.88e-28
33.8191	31.1081	388.0638	159	62	97	102.197	5724	ALL_R2	bacteria	Serratia	3.48e-305
30.3398	27.9077	348.1399	218	206	12	91.683	7848	ALL_R2	bacteria	Alcanivorax	7.31e-06
6.9732	6.4142	80.0149	56	35	21	21.072	2016	ALL_R2	bacteria	Cutibacterium	2.02e-07
<<
13.2368	12.1757	151.8885	40	0	40	40.000	1440	ALL_R2	fungi	Malassezia	2.52e-109
<<
3539.3291	3255.6081	40612.6766	10696	1	10695	10695.389	385056	ALL_R2	viral	Lymphocryptovirus	0.0
<<
2.2832	2.1034	26.7052	13	10	3	6.910	468	R1U	bacteria	Eubacterium	n/a	
0.3304	0.3044	3.8647	1	0	1	1.000	36	R1U	bacteria	Thermoanaerobacter	n/a	
0.3304	0.3044	3.8647	1	0	1	1.000	36	R1U	bacteria	Streptomyces	n/a	
0.3304	0.3044	3.8647	1	0	1	1.000	36	R1U	bacteria	Nocardiopsis	n/a	
0.3304	0.3044	3.8647	1	0	1	1.000	36	R1U	bacteria	Lentzea	n/a	
0.3304	0.3044	3.8647	1	0	1	1.000	36	R1U	bacteria	Lachnoclostridium	n/a	
0.3304	0.3044	3.8647	1	0	1	1.000	36	R1U	bacteria	Kangiella	n/a	
0.3304	0.3044	3.8647	1	0	1	1.000	36	R1U	bacteria	Butyricicoccus	n/a	
0.3304	0.3044	3.8647	1	0	1	1.000	36	R1U	bacteria	Acidovorax	n/a	
<<
2.9738	2.7395	34.7825	9	0	9	9.000	324	R1U	fungi	Malassezia	n/a	
0.3304	0.3044	3.8647	1	0	1	1.000	36	R1U	fungi	Heterobasidion	n/a	
0.3304	0.3044	3.8647	1	0	1	1.000	36	R1U	fungi	Anthracocystis	n/a	
<<
2.8671	2.6373	32.8991	16	12	4	8.664	576	R2U	bacteria	Eubacterium	n/a	
0.6618	0.6088	7.5944	2	0	2	2.000	72	R2U	bacteria	Streptomyces	n/a	
0.3309	0.3044	3.7972	1	0	1	1.000	36	R2U	bacteria	Vibrio	n/a	
0.3309	0.3044	3.7972	1	0	1	1.000	36	R2U	bacteria	Oceanobacillus	n/a	
0.3309	0.3044	3.7972	1	0	1	1.000	36	R2U	bacteria	Klebsiella	n/a	
0.3309	0.3044	3.7972	1	0	1	1.000	36	R2U	bacteria	Herminiimonas	n/a	
0.3309	0.3044	3.7972	1	0	1	1.000	36	R2U	bacteria	Halonatronum	n/a	
0.3309	0.3044	3.7972	1	0	1	1.000	36	R2U	bacteria	Cronobacter	n/a	
0.3309	0.3044	3.7972	1	0	1	1.000	36	R2U	bacteria	Clostridium	n/a	
<<
0.9928	0.9132	11.3916	3	0	3	3.000	108	R2U	fungi	Malassezia	n/a	
0.3309	0.3044	3.7972	1	0	1	1.000	36	R2U	fungi	Tuber	n/a	
0.3309	0.3044	3.7972	1	0	1	1.000	36	R2U	fungi	Meyerozyma	n/a	
0.3309	0.3044	3.7972	1	0	1	1.000	36	R2U	fungi	Magnaporthe	n/a	
0.3309	0.3044	3.7972	1	0	1	1.000	36	R2U	fungi	Hyphopichia	n/a	
0.3309	0.3044	3.7972	1	0	1	1.000	36	R2U	fungi	Gaeumannomyces	n/a	
0.3309	0.3044	3.7972	1	0	1	1.000	36	R2U	fungi	Ascoidea	n/a	
<<
0.3309	0.3044	3.7972	1	0	1	1.000	36	R2U	viral	Lymphocryptovirus	n/a