# 2020/09/01 04:53:35
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR006263	Replication ID
# SRP000547	Sample ID
# ERR006263_1.filt	Read1
# ERR006263_2.filt	Read2
R1	       10140157 (100.0000%)	[A] Total raw reads
R1	        2311155 (22.7921%)	[B] Total reads after QC of (A)
R1		
R1	        2311155 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3629235 (78.5156%)	[B-3] Total mapped reads of (B-2)x2
R1	         993075 (21.4844%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1810140 (78.3219%)	[F] Total mapped reads of (B-2)
R1	         501015 (21.6781%)	[G] Total unmapped reads of (B-2)
R1	         154026 (6.6645%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        2157129 (93.3355%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           3904 (0.1689%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1809.813	[I-3] RPMH of (I-1)
R1	      1689.199	[I-4] PPM of (I-1)
R1	     25346.370	[I-5] RPMU of (I-1)
R1	             30 (0.0013%)	[I-6] Total chimeric reads of (I-1)
R1	        13.907	[I-7] RPMH of (I-6)
R1	        12.981	[I-8] PPM of (I-6)
R1	       194.772	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       10140157 (100.0000%)	[A] Total raw reads
R2	        2311155 (22.7921%)	[B] Total reads after QC of (A)
R2		
R2	        2311155 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3629235 (78.5156%)	[B-3] Total mapped reads of (B-2)x2
R2	         993075 (21.4844%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1819095 (78.7093%)	[F] Total mapped reads of (B-2)
R2	         492060 (21.2907%)	[G] Total unmapped reads of (B-2)
R2	         141940 (6.1415%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        2169215 (93.8585%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           3946 (0.1707%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1819.091	[I-3] RPMH of (I-1)
R2	      1707.371	[I-4] PPM of (I-1)
R2	     27800.479	[I-5] RPMU of (I-1)
R2	             28 (0.0012%)	[I-6] Total chimeric reads of (I-1)
R2	        12.908	[I-7] RPMH of (I-6)
R2	        12.115	[I-8] PPM of (I-6)
R2	       197.267	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
48.5771	45.3397	680.3202	216	185	31	104.787	7776	ALL_R1	bacteria	Eubacterium	4.94e-105
44.3993	41.4403	621.8106	213	195	18	95.775	7668	ALL_R1	bacteria	Alcanivorax	1.02e-46
8.2142	7.6667	115.0390	43	26	17	17.719	1548	ALL_R1	bacteria	Serratia	2.68e-41
3.7893	3.5368	53.0690	29	21	8	8.174	1044	ALL_R1	bacteria	Cutibacterium	1.34e-12
<<
14.8345	13.8459	207.7571	32	0	32	32.000	1152	ALL_R1	fungi	Malassezia	2.50e-278
<<
1622.2484	1514.1343	22719.5344	3500	1	3499	3499.399	126000	ALL_R1	viral	Lymphocryptovirus	0.0
<<
46.5297	43.6721	711.0962	205	170	35	100.933	7380	ALL_R2	bacteria	Eubacterium	2.12e-131
37.9386	35.6086	579.8013	191	178	13	82.297	6876	ALL_R2	bacteria	Alcanivorax	1.48e-22
12.4243	11.6613	189.8760	40	14	26	26.951	1440	ALL_R2	bacteria	Serratia	2.96e-100
3.7382	3.5086	57.1298	15	7	8	8.109	540	ALL_R2	bacteria	Cutibacterium	2.47e-12
<<
12.9079	12.1152	197.2665	28	0	28	28.000	1008	ALL_R2	fungi	Malassezia	4.82e-205
<<
1643.4517	1542.5188	25116.2463	3565	0	3565	3565.000	128340	ALL_R2	viral	Lymphocryptovirus	0.0
<<
3.6066	3.3663	50.5110	18	17	1	7.780	648	R1U	bacteria	Eubacterium	n/a	
0.4636	0.4327	6.4924	1	0	1	1.000	36	R1U	bacteria	Sphingomonas	n/a	
0.4636	0.4327	6.4924	1	0	1	1.000	36	R1U	bacteria	Proteiniphilum	n/a	
0.4636	0.4327	6.4924	1	0	1	1.000	36	R1U	bacteria	Oceanimonas	n/a	
0.4636	0.4327	6.4924	1	0	1	1.000	36	R1U	bacteria	Komagataeibacter	n/a	
0.4636	0.4327	6.4924	1	0	1	1.000	36	R1U	bacteria	Fusobacterium	n/a	
<<
0.4636	0.4327	6.4924	1	0	1	1.000	36	R1U	fungi	Trichoderma	n/a	
0.4636	0.4327	6.4924	1	0	1	1.000	36	R1U	fungi	Sphaerulina	n/a	
0.4636	0.4327	6.4924	1	0	1	1.000	36	R1U	fungi	Malassezia	n/a	
0.4636	0.4327	6.4924	1	0	1	1.000	36	R1U	fungi	Colletotrichum	n/a	
0.4636	0.4327	6.4924	1	0	1	1.000	36	R1U	fungi	Chaetomium	n/a	
<<
3.7456	3.5156	57.2425	13	8	5	8.125	468	R2U	bacteria	Eubacterium	n/a	
0.4610	0.4327	7.0452	1	0	1	1.000	36	R2U	bacteria	Rubrobacter	n/a	
0.4610	0.4327	7.0452	1	0	1	1.000	36	R2U	bacteria	Clostridium	n/a	
0.4610	0.4327	7.0452	1	0	1	1.000	36	R2U	bacteria	Anaerobacillus	n/a	
<<
3.6880	3.4615	56.3618	8	0	8	8.000	288	R2U	fungi	Malassezia	n/a	
0.4610	0.4327	7.0452	1	0	1	1.000	36	R2U	fungi	Schizosaccharomyces	n/a	
0.4610	0.4327	7.0452	1	0	1	1.000	36	R2U	fungi	Laccaria	n/a	
0.4610	0.4327	7.0452	1	0	1	1.000	36	R2U	fungi	Cordyceps	n/a