#Unique_Reads Genus Species # 120 reads uniquely mapped to Abiotrophia (multi-hits among diff. species in Abiotrophia allowed) 120 Abiotrophia Abiotrophia defectiva ATCC 49176 # 86 reads uniquely mapped to Achromobacter (multi-hits among diff. species in Achromobacter allowed) 28 Achromobacter Achromobacter sp. DMS1 25 Achromobacter Achromobacter xylosoxidans 12 Achromobacter Achromobacter insolitus 8 Achromobacter Achromobacter xylosoxidans A8 8 Achromobacter Achromobacter xylosoxidans C54 3 Achromobacter Achromobacter denitrificans 2 Achromobacter Achromobacter denitrificans NBRC 15125 # 314505 reads uniquely mapped to Acinetobacter (multi-hits among diff. species in Acinetobacter allowed) 314457 Acinetobacter Acinetobacter rudis 17 Acinetobacter Acinetobacter baumannii 5 Acinetobacter Acinetobacter johnsonii XBB1 5 Acinetobacter Acinetobacter pittii 2 Acinetobacter Acinetobacter baumannii ZW85-1 2 Acinetobacter Acinetobacter larvae 2 Acinetobacter Acinetobacter lwoffii NCTC 5866 = CIP 64.10 = NIPH 512 1 Acinetobacter Acinetobacter baumannii 1656-2 1 Acinetobacter Acinetobacter bereziniae LMG 1003 = CIP 70.12 1 Acinetobacter Acinetobacter baumannii ACICU 1 Acinetobacter Acinetobacter junii 1 Acinetobacter Acinetobacter brisouii CIP 110357 1 Acinetobacter Acinetobacter harbinensis 1 Acinetobacter Acinetobacter gerneri DSM 14967 = CIP 107464 1 Acinetobacter Acinetobacter parvus DSM 16617 = CIP 108168 1 Acinetobacter Acinetobacter sp. TTH0-4 1 Acinetobacter Acinetobacter calcoaceticus 1 Acinetobacter Acinetobacter schindleri CIP 107287 1 Acinetobacter Acinetobacter ursingii DSM 16037 = CIP 107286 1 Acinetobacter Acinetobacter sp. NCu2D-2 1 Acinetobacter Acinetobacter baumannii BJAB0715 1 Acinetobacter Acinetobacter sp. TGL-Y2 # 54 reads uniquely mapped to Actinobaculum (multi-hits among diff. species in Actinobaculum allowed) 41 Actinobaculum Actinobaculum sp. oral taxon 183 str. F0552 10 Actinobaculum Actinobaculum massiliense ACS-171-V-Col2 3 Actinobaculum Actinobaculum suis # 84 reads uniquely mapped to Actinomyces (multi-hits among diff. species in Actinomyces allowed) 36 Actinomyces Actinomyces graevenitzii C83 13 Actinomyces Actinomyces meyeri 11 Actinomyces Actinomyces sp. Marseille-P2985 8 Actinomyces Actinomyces odontolyticus ATCC 17982 4 Actinomyces Actinomyces sp. VUL4_3 4 Actinomyces Actinomyces sp. oral taxon 848 str. F0332 2 Actinomyces Actinomyces turicensis ACS-279-V-Col4 2 Actinomyces Actinomyces radicidentis 1 Actinomyces Actinomyces johnsonii F0542 1 Actinomyces Actinomyces dentalis DSM 19115 1 Actinomyces Actinomyces oris 1 Actinomyces Actinomyces urogenitalis DSM 15434 # 67 reads uniquely mapped to Alysiella (multi-hits among diff. species in Alysiella allowed) 67 Alysiella Alysiella crassa DSM 2578 # 15 reads uniquely mapped to Anaerococcus (multi-hits among diff. species in Anaerococcus allowed) 6 Anaerococcus Anaerococcus hydrogenalis DSM 7454 3 Anaerococcus Anaerococcus pacaensis 9403502 2 Anaerococcus Anaerococcus prevotii DSM 20548 2 Anaerococcus Anaerococcus lactolyticus ATCC 51172 1 Anaerococcus Anaerococcus mediterraneensis 1 Anaerococcus Anaerococcus tetradius ATCC 35098 # 26 reads uniquely mapped to Bulleidia (multi-hits among diff. species in Bulleidia allowed) 26 Bulleidia Bulleidia extructa W1219 # 86 reads uniquely mapped to Burkholderia (multi-hits among diff. species in Burkholderia allowed) 11 Burkholderia Burkholderia sp. CCGE1002 9 Burkholderia Burkholderia cenocepacia 6 Burkholderia Candidatus Burkholderia crenata 4 Burkholderia Burkholderia sp. RPE67 4 Burkholderia Burkholderia vietnamiensis 4 Burkholderia Burkholderia cepacia 3 Burkholderia Burkholderia vietnamiensis LMG 10929 3 Burkholderia Burkholderia sp. YI23 3 Burkholderia Burkholderia pseudomallei 2 Burkholderia Burkholderia pseudomallei HBPUB10134a 2 Burkholderia Burkholderia multivorans 2 Burkholderia Burkholderia ubonensis MSMB22 2 Burkholderia Burkholderia glumae PG1 2 Burkholderia Burkholderia sp. OLGA172 2 Burkholderia Burkholderia cenocepacia J2315 2 Burkholderia Burkholderia pseudomallei K42 2 Burkholderia Burkholderia sp. CCGE1001 2 Burkholderia Burkholderia sp. KJ006 1 Burkholderia Burkholderia diffusa 1 Burkholderia Burkholderia seminalis 1 Burkholderia Burkholderia cenocepacia H111 1 Burkholderia Burkholderia ubonensis 1 Burkholderia Burkholderia dolosa AU0158 1 Burkholderia Burkholderia multivorans ATCC 17616 1 Burkholderia Burkholderia cepacia ATCC 25416 1 Burkholderia Burkholderia pseudomallei MSHR305 1 Burkholderia Burkholderia multivorans ATCC BAA-247 1 Burkholderia Burkholderia stabilis 1 Burkholderia Burkholderia pseudomallei 406e 1 Burkholderia Burkholderia thailandensis MSMB59 1 Burkholderia Burkholderia mallei ATCC 23344 1 Burkholderia Burkholderia gladioli BSR3 1 Burkholderia Burkholderia pseudomallei MSHR5848 1 Burkholderia Burkholderia lata 1 Burkholderia Burkholderia sp. RPE64 1 Burkholderia Burkholderia glumae LMG 2196 = ATCC 33617 1 Burkholderia Burkholderia pseudomallei 1710b 1 Burkholderia Burkholderia ambifaria MC40-6 1 Burkholderia Burkholderia sp. PAMC 26561 # 30 reads uniquely mapped to Campylobacter (multi-hits among diff. species in Campylobacter allowed) 5 Campylobacter Campylobacter coli 4 Campylobacter Campylobacter mucosalis 3 Campylobacter Campylobacter showae CSUNSWCD 3 Campylobacter Campylobacter curvus 525.92 3 Campylobacter Campylobacter concisus 2 Campylobacter Campylobacter concisus 13826 1 Campylobacter Campylobacter jejuni 1 Campylobacter Campylobacter lari NCTC 11845 1 Campylobacter Campylobacter subantarcticus LMG 24377 1 Campylobacter Campylobacter sp. MIT 97-5078 1 Campylobacter Campylobacter sp. RM16704 1 Campylobacter Campylobacter coli CVM N29710 1 Campylobacter Campylobacter subantarcticus LMG 24374 1 Campylobacter Campylobacter gracilis 1 Campylobacter Campylobacter lari RM2100 1 Campylobacter Campylobacter ureolyticus RIGS 9880 # 4772 reads uniquely mapped to Capnocytophaga (multi-hits among diff. species in Capnocytophaga allowed) 2551 Capnocytophaga Capnocytophaga ochracea DSM 7271 2139 Capnocytophaga Capnocytophaga sp. oral taxon 323 23 Capnocytophaga Capnocytophaga gingivalis ATCC 33624 18 Capnocytophaga Capnocytophaga haemolytica 14 Capnocytophaga Capnocytophaga sp. oral taxon 329 str. F0087 12 Capnocytophaga Capnocytophaga granulosa ATCC 51502 9 Capnocytophaga Capnocytophaga canimorsus Cc5 4 Capnocytophaga Capnocytophaga sp. oral taxon 338 str. F0234 1 Capnocytophaga Capnocytophaga canis 1 Capnocytophaga Capnocytophaga cynodegmi DSM 19736 # 11 reads uniquely mapped to Catonella (multi-hits among diff. species in Catonella allowed) 11 Catonella Catonella morbi ATCC 51271 # 58 reads uniquely mapped to Cellulomonas (multi-hits among diff. species in Cellulomonas allowed) 27 Cellulomonas Cellulomonas flavigena 9 Cellulomonas Cellulomonas carbonis T26 5 Cellulomonas Cellulomonas flavigena DSM 20109 4 Cellulomonas Cellulomonas bogoriensis 69B4 = DSM 16987 3 Cellulomonas Cellulomonas gilvus ATCC 13127 3 Cellulomonas Cellulomonas fimi ATCC 484 3 Cellulomonas Cellulomonas sp. Root930 2 Cellulomonas Cellulomonas sp. KRMCY2 1 Cellulomonas Cellulomonas sp. HZM 1 Cellulomonas Cellulomonas sp. A375-1 # 63 reads uniquely mapped to Corynebacterium (multi-hits among diff. species in Corynebacterium allowed) 13 Corynebacterium Corynebacterium pseudotuberculosis 7 Corynebacterium Corynebacterium glutamicum 6 Corynebacterium Corynebacterium variabile 4 Corynebacterium Corynebacterium glyciniphilum AJ 3170 3 Corynebacterium Corynebacterium glutamicum K051 2 Corynebacterium Corynebacterium accolens ATCC 49725 2 Corynebacterium Corynebacterium jeikeium K411 2 Corynebacterium Corynebacterium freneyi DNF00450 2 Corynebacterium Corynebacterium pseudodiphtheriticum DSM 44287 2 Corynebacterium Corynebacterium lactis RW2-5 2 Corynebacterium Corynebacterium sp. ATCC 6931 2 Corynebacterium Corynebacterium maris DSM 45190 1 Corynebacterium Corynebacterium frankenforstense DSM 45800 1 Corynebacterium Corynebacterium falsenii 1 Corynebacterium Corynebacterium diphtheriae 31A 1 Corynebacterium Corynebacterium halotolerans YIM 70093 = DSM 44683 1 Corynebacterium Corynebacterium ulcerans 1 Corynebacterium Corynebacterium ulceribovis DSM 45146 1 Corynebacterium Corynebacterium timonense 5401744 1 Corynebacterium Corynebacterium terpenotabidum Y-11 1 Corynebacterium Corynebacterium ulcerans FRC11 1 Corynebacterium Corynebacterium glutamicum R 1 Corynebacterium Corynebacterium kroppenstedtii DSM 44385 1 Corynebacterium Corynebacterium diphtheriae BH8 1 Corynebacterium Corynebacterium flavescens 1 Corynebacterium Corynebacterium glutamicum SCgG1 1 Corynebacterium Corynebacterium sp. NML98-0116 1 Corynebacterium Corynebacterium resistens DSM 45100 # 54 reads uniquely mapped to Cutibacterium (multi-hits among diff. species in Cutibacterium allowed) 10 Cutibacterium Cutibacterium avidum 9 Cutibacterium Cutibacterium acnes 8 Cutibacterium Cutibacterium avidum 44067 7 Cutibacterium [Propionibacterium] namnetense SK182B-JCVI 5 Cutibacterium Cutibacterium granulosum DSM 20700 4 Cutibacterium Propionibacterium acnes HL096PA1 3 Cutibacterium Propionibacterium acnes TypeIA2 P.acn33 2 Cutibacterium [Propionibacterium] humerusii P08 2 Cutibacterium Propionibacterium acnes 266 2 Cutibacterium Propionibacterium acnes KPA171202 1 Cutibacterium Propionibacterium acnes TypeIA2 P.acn17 1 Cutibacterium Propionibacterium acnes hdn-1 # 16 reads uniquely mapped to Cytophaga (multi-hits among diff. species in Cytophaga allowed) 14 Cytophaga Cytophaga hutchinsonii ATCC 33406 2 Cytophaga Cytophaga aurantiaca DSM 3654 # 38 reads uniquely mapped to Dialister (multi-hits among diff. species in Dialister allowed) 21 Dialister Dialister micraerophilus DSM 19965 7 Dialister Dialister pneumosintes 6 Dialister Dialister invisus DSM 15470 4 Dialister Dialister succinatiphilus YIT 11850 # 76 reads uniquely mapped to Eikenella (multi-hits among diff. species in Eikenella allowed) 76 Eikenella Eikenella corrodens ATCC 23834 # 374 reads uniquely mapped to Escherichia (multi-hits among diff. species in Escherichia allowed) 209 Escherichia Escherichia coli 43 Escherichia Escherichia coli K-12 17 Escherichia Escherichia coli str. K-12 substr. MG1655 10 Escherichia Escherichia coli B 7 Escherichia Escherichia coli str. K-12 substr. DH10B 7 Escherichia Escherichia coli DH1 5 Escherichia Escherichia coli O157:H7 5 Escherichia Escherichia coli BW2952 4 Escherichia NZ_CP014197 4 Escherichia Escherichia coli 'BL21-Gold(DE3)pLysS AG' 4 Escherichia Escherichia coli ER2796 3 Escherichia Escherichia coli UMN026 3 Escherichia Escherichia coli P12b 3 Escherichia Escherichia coli ECC-1470 3 Escherichia Escherichia coli UMNK88 2 Escherichia Escherichia coli 1303 2 Escherichia Escherichia coli KO11FL 2 Escherichia Escherichia coli VR50 2 Escherichia Escherichia coli BL21(DE3) 2 Escherichia Escherichia coli 55989 2 Escherichia Escherichia coli str. Sanji 2 Escherichia NZ_CP014492 2 Escherichia Escherichia coli O157:H7 str. EDL933 2 Escherichia Escherichia coli str. K-12 substr. MDS42 2 Escherichia Escherichia coli O157 2 Escherichia Escherichia coli ETEC H10407 2 Escherichia Escherichia coli O103:H2 str. 12009 1 Escherichia Escherichia coli B str. REL606 1 Escherichia NZ_CP014670 1 Escherichia Escherichia coli UTI89 1 Escherichia Escherichia coli KLY 1 Escherichia Escherichia coli O104:H4 str. 2011C-3493 1 Escherichia Escherichia coli O104:H4 str. 2009EL-2050 1 Escherichia Escherichia coli str. 'clone D i14' 1 Escherichia Escherichia coli O25b:H4-ST131 1 Escherichia Escherichia coli ATCC 8739 1 Escherichia Escherichia coli SE15 1 Escherichia Escherichia coli O145:H28 str. RM13514 1 Escherichia Escherichia coli CFT073 1 Escherichia Escherichia coli BW25113 1 Escherichia Escherichia coli str. K-12 substr. MC4100 1 Escherichia Escherichia coli LF82 1 Escherichia Escherichia coli APEC IMT5155 1 Escherichia Escherichia coli ATCC 25922 1 Escherichia Escherichia coli O104:H4 str. 2009EL-2071 1 Escherichia Escherichia coli O55:H7 str. CB9615 1 Escherichia Escherichia coli O55:H7 str. RM12579 1 Escherichia Escherichia coli str. K-12 substr. W3110 1 Escherichia Escherichia coli Xuzhou21 1 Escherichia Escherichia coli O145:H28 str. RM13516 # 13 reads uniquely mapped to Fusobacterium (multi-hits among diff. species in Fusobacterium allowed) 3 Fusobacterium Fusobacterium nucleatum subsp. animalis 4_8 2 Fusobacterium Fusobacterium periodonticum 2_1_31 2 Fusobacterium Fusobacterium hwasookii ChDC F206 1 Fusobacterium Fusobacterium nucleatum subsp. animalis 7_1 1 Fusobacterium Fusobacterium nucleatum subsp. animalis 1 Fusobacterium Fusobacterium ulcerans ATCC 49185 1 Fusobacterium Fusobacterium nucleatum subsp. nucleatum ATCC 25586 1 Fusobacterium Fusobacterium nucleatum subsp. polymorphum 1 Fusobacterium Fusobacterium necrophorum subsp. funduliforme ATCC 51357 # 56 reads uniquely mapped to Gemella (multi-hits among diff. species in Gemella allowed) 46 Gemella Gemella haemolysans ATCC 10379 9 Gemella Gemella sp. oral taxon 928 1 Gemella Gemella bergeriae ATCC 700627 # 126 reads uniquely mapped to Granulicatella (multi-hits among diff. species in Granulicatella allowed) 74 Granulicatella Granulicatella elegans ATCC 700633 52 Granulicatella Granulicatella adiacens ATCC 49175 # 42 reads uniquely mapped to Hymenobacter (multi-hits among diff. species in Hymenobacter allowed) 31 Hymenobacter Hymenobacter terrenus 3 Hymenobacter Hymenobacter swuensis DY53 3 Hymenobacter Hymenobacter sp. APR13 2 Hymenobacter Hymenobacter sp. IS2118 1 Hymenobacter Hymenobacter sp. PAMC 26628 1 Hymenobacter Hymenobacter sp. PAMC 26554 1 Hymenobacter Hymenobacter sedentarius # 43 reads uniquely mapped to Hyphomicrobium (multi-hits among diff. species in Hyphomicrobium allowed) 13 Hyphomicrobium Hyphomicrobium nitrativorans NL23 8 Hyphomicrobium Hyphomicrobium sp. MC1 7 Hyphomicrobium Hyphomicrobium sp. 99 6 Hyphomicrobium Hyphomicrobium zavarzinii ATCC 27496 5 Hyphomicrobium Hyphomicrobium denitrificans 1NES1 4 Hyphomicrobium Hyphomicrobium denitrificans ATCC 51888 # 46 reads uniquely mapped to Lachnoanaerobaculum (multi-hits among diff. species in Lachnoanaerobaculum allowed) 43 Lachnoanaerobaculum Lachnoanaerobaculum sp. OBRC5-5 3 Lachnoanaerobaculum Lachnoanaerobaculum saburreum DSM 3986 # 472 reads uniquely mapped to Lactobacillus (multi-hits among diff. species in Lactobacillus allowed) 107 Lactobacillus Lactobacillus salivarius 61 Lactobacillus Lactobacillus salivarius str. Ren 56 Lactobacillus Lactobacillus salivarius UCC118 53 Lactobacillus Lactobacillus salivarius CECT 5713 30 Lactobacillus Lactobacillus gasseri ATCC 33323 = JCM 1131 22 Lactobacillus Lactobacillus reuteri 14 Lactobacillus Lactobacillus concavus DSM 17758 13 Lactobacillus Lactobacillus vaginalis DSM 5837 = ATCC 49540 12 Lactobacillus Lactobacillus reuteri DSM 20016 10 Lactobacillus Lactobacillus reuteri I5007 8 Lactobacillus Lactobacillus curvatus 7 Lactobacillus Lactobacillus selangorensis 6 Lactobacillus Lactobacillus reuteri SD2112 5 Lactobacillus Lactobacillus reuteri JCM 1112 5 Lactobacillus Lactobacillus reuteri TD1 5 Lactobacillus Lactobacillus dextrinicus DSM 20335 5 Lactobacillus Lactobacillus acidipiscis 4 Lactobacillus Lactobacillus coleohominis 101-4-CHN 3 Lactobacillus Lactobacillus vini DSM 20605 3 Lactobacillus Lactobacillus ruminis ATCC 27782 2 Lactobacillus Lactobacillus amylolyticus 2 Lactobacillus Lactobacillus mucosae LM1 2 Lactobacillus Lactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 2 Lactobacillus Lactobacillus delbrueckii subsp. bulgaricus 2 Lactobacillus Lactobacillus kunkeei 2 Lactobacillus NZ_CP015408 2 Lactobacillus Lactobacillus rennini DSM 20253 2 Lactobacillus Lactobacillus saerimneri DSM 16049 2 Lactobacillus Lactobacillus pobuzihii E100301 = KCTC 13174 2 Lactobacillus Lactobacillus siliginis 2 Lactobacillus Lactobacillus johnsonii FI9785 2 Lactobacillus Lactobacillus ghanensis DSM 18630 1 Lactobacillus Lactobacillus secaliphilus 1 Lactobacillus Lactobacillus pontis DSM 8475 1 Lactobacillus Lactobacillus hayakitensis DSM 18933 = JCM 14209 1 Lactobacillus Lactobacillus helveticus CNRZ32 1 Lactobacillus Lactobacillus mellifer 1 Lactobacillus Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 1 Lactobacillus Lactobacillus frumenti DSM 13145 1 Lactobacillus Lactobacillus fuchuensis DSM 14340 = JCM 11249 1 Lactobacillus Lactobacillus apis 1 Lactobacillus Lactobacillus backii 1 Lactobacillus Lactobacillus ozensis DSM 23829 = JCM 17196 1 Lactobacillus Lactobacillus fructivorans KCTC 3543 = DSM 20203 1 Lactobacillus Lactobacillus sp. WiKim39 1 Lactobacillus Lactobacillus senioris DSM 24302 = JCM 17472 1 Lactobacillus Lactobacillus fermentum CECT 5716 1 Lactobacillus Lactobacillus floricola DSM 23037 = JCM 16512 1 Lactobacillus Lactobacillus iners DSM 13335 1 Lactobacillus Lactobacillus johnsonii N6.2 1 Lactobacillus Lactobacillus johnsonii NCC 533 # 386 reads uniquely mapped to Lautropia (multi-hits among diff. species in Lautropia allowed) 386 Lautropia Lautropia mirabilis ATCC 51599 # 46 reads uniquely mapped to Lawsonella (multi-hits among diff. species in Lawsonella allowed) 46 Lawsonella Lawsonella clevelandensis # 322097 reads uniquely mapped to Leucobacter (multi-hits among diff. species in Leucobacter allowed) 166719 Leucobacter Leucobacter celer subsp. astrifaciens 155304 Leucobacter Leucobacter sp. UCD-THU 30 Leucobacter Leucobacter sp. Ag1 16 Leucobacter Leucobacter chromiiresistens JG 31 14 Leucobacter Leucobacter salsicius M1-8 12 Leucobacter Leucobacter chromiiresistens 1 Leucobacter Leucobacter sp. PH1c 1 Leucobacter Leucobacter komagatae # 48 reads uniquely mapped to Methylobacterium (multi-hits among diff. species in Methylobacterium allowed) 14 Methylobacterium Methylobacterium sp. 4-46 6 Methylobacterium Methylobacterium sp. ZNC0032 3 Methylobacterium Methylobacterium nodulans ORS 2060 3 Methylobacterium Methylobacterium sp. 77 3 Methylobacterium Methylobacterium radiotolerans JCM 2831 3 Methylobacterium Methylobacterium aquaticum 3 Methylobacterium Methylobacterium phyllosphaerae 3 Methylobacterium Methylobacterium extorquens 2 Methylobacterium Methylobacterium populi BJ001 2 Methylobacterium Methylobacterium extorquens PA1 2 Methylobacterium Methylobacterium sp. C1 1 Methylobacterium Methylobacterium extorquens CM4 1 Methylobacterium Methylobacterium sp. ARG-1 1 Methylobacterium Methylobacterium extorquens AM1 1 Methylobacterium Methylobacterium populi # 86 reads uniquely mapped to Methylotenera (multi-hits among diff. species in Methylotenera allowed) 30 Methylotenera Methylotenera mobilis JLW8 27 Methylotenera Methylotenera versatilis 79 21 Methylotenera Methylotenera versatilis 301 8 Methylotenera Methylotenera sp. 1P/1 # 49 reads uniquely mapped to Mobilicoccus (multi-hits among diff. species in Mobilicoccus allowed) 26 Mobilicoccus Mobilicoccus sp. SIT2 23 Mobilicoccus Mobilicoccus pelagius NBRC 104925 # 52 reads uniquely mapped to Moraxella (multi-hits among diff. species in Moraxella allowed) 14 Moraxella Moraxella osloensis 11 Moraxella Moraxella catarrhalis 10 Moraxella Moraxella bovoculi 5 Moraxella Moraxella ovis 4 Moraxella Moraxella macacae 0408225 3 Moraxella Moraxella catarrhalis BBH18 3 Moraxella Moraxella boevrei DSM 14165 2 Moraxella Moraxella caprae DSM 19149 # 534 reads uniquely mapped to Mycoplasma (multi-hits among diff. species in Mycoplasma allowed) 163 Mycoplasma Mycoplasma hominis 94 Mycoplasma Mycoplasma hominis ATCC 23114 90 Mycoplasma Mycoplasma salivarium ATCC 23064 78 Mycoplasma Mycoplasma hominis ATCC 27545 26 Mycoplasma Mycoplasma testudinis ATCC 43263 11 Mycoplasma Mycoplasma orale ATCC 23714 6 Mycoplasma Mycoplasma mycoides subsp. capri str. GM12 5 Mycoplasma Mycoplasma hyorhinis SK76 5 Mycoplasma Mycoplasma gallisepticum str. F 5 Mycoplasma Mycoplasma penetrans HF-2 4 Mycoplasma Mycoplasma capricolum subsp. capripneumoniae 4 Mycoplasma Mycoplasma canadense 4 Mycoplasma Mycoplasma alvi ATCC 29626 3 Mycoplasma Mycoplasma yeatsii GM274B 3 Mycoplasma Mycoplasma hyosynoviae 3 Mycoplasma Mycoplasma hyorhinis GDL-1 3 Mycoplasma Mycoplasma hyorhinis DBS 1050 2 Mycoplasma Mycoplasma mycoides subsp. capri LC str. 95010 2 Mycoplasma Mycoplasma capricolum subsp. capripneumoniae 87001 2 Mycoplasma Mycoplasma pullorum 2 Mycoplasma Mycoplasma alkalescens 14918 2 Mycoplasma Mycoplasma arginini 2 Mycoplasma Mycoplasma gallisepticum NC95_13295-2-2P 2 Mycoplasma Mycoplasma arthritidis 158L3-1 1 Mycoplasma Mycoplasma californicum HAZ160_1 1 Mycoplasma Mycoplasma hyorhinis MCLD 1 Mycoplasma Mycoplasma pirum ATCC 25960 1 Mycoplasma Mycoplasma spumans ATCC 19526 1 Mycoplasma Mycoplasma hyorhinis HUB-1 1 Mycoplasma Mycoplasma gallisepticum CA06_2006.052-5-2P 1 Mycoplasma Mycoplasma capricolum subsp. capricolum ATCC 27343 1 Mycoplasma Mycoplasma auris 15026 1 Mycoplasma Mycoplasma molare ATCC 27746 1 Mycoplasma Mycoplasma putrefaciens KS1 1 Mycoplasma Mycoplasma cloacale ATCC 35276 1 Mycoplasma Mycoplasma mycoides subsp. capri 1 Mycoplasma Mycoplasma iowae 695 # 7494 reads uniquely mapped to Neisseria (multi-hits among diff. species in Neisseria allowed) 7412 Neisseria Neisseria arctica 49 Neisseria Neisseria meningitidis 9 Neisseria Neisseria sicca 5 Neisseria Neisseria elongata subsp. glycolytica ATCC 29315 3 Neisseria Neisseria meningitidis M04-240196 3 Neisseria Neisseria bacilliformis ATCC BAA-1200 3 Neisseria Neisseria gonorrhoeae 2 Neisseria Neisseria meningitidis 8013 2 Neisseria Neisseria lactamica 020-06 1 Neisseria Neisseria gonorrhoeae NCCP11945 1 Neisseria Neisseria weaveri 1 Neisseria Neisseria gonorrhoeae FA 1090 1 Neisseria Neisseria lactamica 1 Neisseria Neisseria meningitidis H44/76 1 Neisseria Neisseria meningitidis M01-240355 # 29 reads uniquely mapped to Parvimonas (multi-hits among diff. species in Parvimonas allowed) 29 Parvimonas Parvimonas micra # 16 reads uniquely mapped to Peptoanaerobacter (multi-hits among diff. species in Peptoanaerobacter allowed) 10 Peptoanaerobacter Peptoanaerobacter stomatis 6 Peptoanaerobacter [Eubacterium] yurii subsp. margaretiae ATCC 43715 # 30 reads uniquely mapped to Peptostreptococcus (multi-hits among diff. species in Peptostreptococcus allowed) 23 Peptostreptococcus Peptostreptococcus stomatis DSM 17678 7 Peptostreptococcus Peptostreptococcus anaerobius VPI 4330 = DSM 2949 # 25 reads uniquely mapped to Phocaeicola (multi-hits among diff. species in Phocaeicola allowed) 25 Phocaeicola Phocaeicola abscessus CCUG 55929 # 1290 reads uniquely mapped to Prevotella (multi-hits among diff. species in Prevotella allowed) 681 Prevotella Prevotella melaninogenica ATCC 25845 314 Prevotella Prevotella salivae DSM 15606 158 Prevotella Prevotella scopos JCM 17725 37 Prevotella Prevotella sp. S7 MS 2 34 Prevotella Prevotella histicola JCM 15637 = DNF00424 9 Prevotella Prevotella fusca JCM 17724 8 Prevotella Prevotella oris DSM 18711 = JCM 12252 8 Prevotella Prevotella oulorum JCM 14966 7 Prevotella Prevotella maculosa DSM 19339 = JCM 15638 6 Prevotella Prevotella loescheii DSM 19665 = JCM 12249 = ATCC 15930 4 Prevotella Prevotella enoeca 4 Prevotella Prevotella ruminicola 23 3 Prevotella Prevotella denticola F0289 2 Prevotella Prevotella buccalis ATCC 35310 2 Prevotella Prevotella sp. 10(H) 2 Prevotella Prevotella intermedia 2 Prevotella Prevotella pallens ATCC 700821 2 Prevotella Prevotella nanceiensis DSM 19126 = JCM 15639 1 Prevotella Prevotella sp. S7-1-8 1 Prevotella Prevotella copri DSM 18205 1 Prevotella Prevotella bergensis DSM 17361 1 Prevotella Prevotella oryzae DSM 17970 1 Prevotella Prevotella nigrescens ATCC 33563 1 Prevotella Prevotella baroniae DSM 16972 = JCM 13447 1 Prevotella Prevotella sp. FD3004 # 313462 reads uniquely mapped to Pseudomonas (multi-hits among diff. species in Pseudomonas allowed) 313383 Pseudomonas Pseudomonas pelagia CL-AP6 10 Pseudomonas Pseudomonas aeruginosa 5 Pseudomonas Pseudomonas aeruginosa NCGM2.S1 4 Pseudomonas Pseudomonas citronellolis 3 Pseudomonas Pseudomonas oryzihabitans 3 Pseudomonas Pseudomonas knackmussii B13 3 Pseudomonas Pseudomonas aeruginosa VRFPA04 3 Pseudomonas Pseudomonas sp. S-6-2 3 Pseudomonas Pseudomonas saudimassiliensis 2 Pseudomonas Pseudomonas balearica DSM 6083 2 Pseudomonas Pseudomonas syringae pv. syringae HS191 2 Pseudomonas Pseudomonas sp. CCOS 191 2 Pseudomonas Pseudomonas versuta 1 Pseudomonas Pseudomonas sp. TCU-HL1 1 Pseudomonas Pseudomonas sp. VLB120 1 Pseudomonas Pseudomonas fluorescens F113 1 Pseudomonas Pseudomonas poae RE*1-1-14 1 Pseudomonas NZ_CP008860 1 Pseudomonas Pseudomonas monteilii 1 Pseudomonas Pseudomonas putida H8234 1 Pseudomonas Pseudomonas stutzeri 1 Pseudomonas Pseudomonas frederiksbergensis 1 Pseudomonas Pseudomonas antarctica 1 Pseudomonas Pseudomonas plecoglossicida 1 Pseudomonas Pseudomonas putida ND6 1 Pseudomonas Pseudomonas sp. A3(2016) 1 Pseudomonas Pseudomonas alcaliphila JAB1 1 Pseudomonas Pseudomonas sp. FGI182 1 Pseudomonas Pseudomonas fluorescens 1 Pseudomonas Pseudomonas aeruginosa SJTD-1 1 Pseudomonas NZ_CP008858 1 Pseudomonas Pseudomonas putida HB3267 1 Pseudomonas Pseudomonas psychrotolerans 1 Pseudomonas Pseudomonas sp. UW4 1 Pseudomonas Pseudomonas syringae pv. actinidiae ICMP 9853 1 Pseudomonas NZ_CP008872 1 Pseudomonas Pseudomonas putida S13.1.2 1 Pseudomonas Pseudomonas putida 1 Pseudomonas Pseudomonas parafulva 1 Pseudomonas Pseudomonas aeruginosa MTB-1 1 Pseudomonas Pseudomonas fragi 1 Pseudomonas Pseudomonas luteola XLDN4-9 1 Pseudomonas Pseudomonas stutzeri RCH2 1 Pseudomonas Pseudomonas mendocina S5.2 1 Pseudomonas Pseudomonas flexibilis 1 Pseudomonas Pseudomonas protegens CHA0 1 Pseudomonas Pseudomonas pseudoalcaligenes 1 Pseudomonas Pseudomonas syringae pv. actinidiae 1 Pseudomonas Pseudomonas aeruginosa DSM 50071 = NBRC 12689 1 Pseudomonas NZ_CP008866 # 93 reads uniquely mapped to Rothia (multi-hits among diff. species in Rothia allowed) 36 Rothia Rothia dentocariosa 22 Rothia Rothia mucilaginosa DY-18 19 Rothia Rothia dentocariosa ATCC 17931 16 Rothia Rothia mucilaginosa # 85 reads uniquely mapped to Serratia (multi-hits among diff. species in Serratia allowed) 13 Serratia Serratia sp. ATCC 39006 12 Serratia Serratia marcescens 10 Serratia Serratia fonticola 6 Serratia Serratia marcescens SMB2099 6 Serratia Serratia odorifera DSM 4582 4 Serratia Serratia sp. SCBI 4 Serratia Serratia marcescens SM39 4 Serratia Serratia plymuthica 4 Serratia Serratia marcescens subsp. marcescens Db11 3 Serratia Serratia plymuthica 4Rx13 3 Serratia Serratia rubidaea 3 Serratia Serratia plymuthica S13 2 Serratia Serratia liquefaciens 2 Serratia Serratia marcescens FGI94 2 Serratia Serratia sp. AS12 2 Serratia Serratia plymuthica AS9 1 Serratia Serratia sp. FS14 1 Serratia Serratia plymuthica PRI-2C 1 Serratia Serratia proteamaculans 568 1 Serratia Serratia sp. DD3 1 Serratia Serratia marcescens WW4 # 8 reads uniquely mapped to Solobacterium (multi-hits among diff. species in Solobacterium allowed) 8 Solobacterium Solobacterium moorei DSM 22971 # 9 reads uniquely mapped to Sphaerochaeta (multi-hits among diff. species in Sphaerochaeta allowed) 4 Sphaerochaeta Sphaerochaeta pleomorpha str. Grapes 3 Sphaerochaeta Sphaerochaeta coccoides DSM 17374 2 Sphaerochaeta Sphaerochaeta globosa str. Buddy # 18 reads uniquely mapped to Spirosoma (multi-hits among diff. species in Spirosoma allowed) 8 Spirosoma Spirosoma aerolatum 4 Spirosoma Spirosoma luteum DSM 19990 3 Spirosoma Spirosoma rigui 2 Spirosoma Spirosoma radiotolerans 1 Spirosoma Spirosoma montaniterrae # 112 reads uniquely mapped to Staphylococcus (multi-hits among diff. species in Staphylococcus allowed) 16 Staphylococcus Staphylococcus vitulinus F1028 13 Staphylococcus Staphylococcus microti 13 Staphylococcus Staphylococcus aureus 11 Staphylococcus Staphylococcus lentus F1142 10 Staphylococcus Staphylococcus sciuri subsp. sciuri 8 Staphylococcus Staphylococcus aureus subsp. aureus 6 Staphylococcus Staphylococcus schleiferi 5 Staphylococcus Staphylococcus hyicus 3 Staphylococcus Staphylococcus aureus subsp. aureus ST398 3 Staphylococcus Staphylococcus epidermidis PM221 3 Staphylococcus Staphylococcus aureus subsp. aureus NCTC 8325 3 Staphylococcus Staphylococcus equorum 3 Staphylococcus Staphylococcus saprophyticus 2 Staphylococcus Staphylococcus aureus subsp. aureus HO 5096 0412 2 Staphylococcus Staphylococcus epidermidis RP62A 2 Staphylococcus Staphylococcus xylosus 1 Staphylococcus Staphylococcus aureus subsp. aureus MSSA476 1 Staphylococcus Staphylococcus aureus subsp. aureus SA40 1 Staphylococcus Staphylococcus lugdunensis 1 Staphylococcus Staphylococcus aureus subsp. aureus MW2 1 Staphylococcus Staphylococcus epidermidis 1 Staphylococcus Staphylococcus pseudintermedius 1 Staphylococcus Staphylococcus argenteus 1 Staphylococcus Staphylococcus aureus subsp. aureus LGA251 1 Staphylococcus Staphylococcus lugdunensis HKU09-01 # 1255 reads uniquely mapped to Streptococcus (multi-hits among diff. species in Streptococcus allowed) 296 Streptococcus Streptococcus parasanguinis FW213 234 Streptococcus Streptococcus parasanguinis ATCC 15912 89 Streptococcus Streptococcus oralis 44 Streptococcus Streptococcus pneumoniae 40 Streptococcus Streptococcus mitis 39 Streptococcus Streptococcus oralis Uo5 38 Streptococcus Streptococcus sp. A12 32 Streptococcus Streptococcus mitis B6 31 Streptococcus Streptococcus gordonii 24 Streptococcus Streptococcus sanguinis SK36 22 Streptococcus Streptococcus sp. I-P16 21 Streptococcus Streptococcus sp. I-G2 20 Streptococcus Streptococcus pneumoniae SPN032672 19 Streptococcus Streptococcus gordonii str. Challis substr. CH1 17 Streptococcus Streptococcus gallolyticus 15 Streptococcus Streptococcus pneumoniae 70585 14 Streptococcus Streptococcus cristatus AS 1.3089 12 Streptococcus Streptococcus pneumoniae SPN033038 12 Streptococcus Streptococcus pneumoniae SPN994039 10 Streptococcus Streptococcus oralis subsp. tigurinus AZ_3a 10 Streptococcus Streptococcus pneumoniae 670-6B 9 Streptococcus Streptococcus pneumoniae Hungary19A-6 9 Streptococcus Streptococcus pneumoniae SPN034156 9 Streptococcus Streptococcus pneumoniae TCH8431/19A 8 Streptococcus Streptococcus pneumoniae SPN034183 8 Streptococcus Streptococcus pneumoniae P1031 8 Streptococcus Streptococcus himalayensis 8 Streptococcus Streptococcus pneumoniae Taiwan19F-14 8 Streptococcus Streptococcus pneumoniae gamPNI0373 7 Streptococcus Streptococcus pneumoniae OXC141 6 Streptococcus Streptococcus pneumoniae INV104 6 Streptococcus Streptococcus pneumoniae SPN994038 5 Streptococcus Streptococcus pneumoniae D39 5 Streptococcus Streptococcus thermophilus 5 Streptococcus Streptococcus pneumoniae SPNA45 5 Streptococcus Streptococcus sp. oral taxon 431 5 Streptococcus Streptococcus pneumoniae JJA 5 Streptococcus Streptococcus pyogenes 5 Streptococcus Streptococcus pyogenes MGAS8232 5 Streptococcus Streptococcus salivarius 4 Streptococcus Streptococcus constellatus subsp. pharyngis C232 4 Streptococcus Streptococcus infantarius 4 Streptococcus Streptococcus pneumoniae R6 4 Streptococcus Streptococcus pneumoniae INV200 4 Streptococcus Streptococcus pneumoniae ST556 3 Streptococcus Streptococcus infantarius subsp. infantarius CJ18 3 Streptococcus Streptococcus pneumoniae ATCC 700669 3 Streptococcus Streptococcus urinalis 2285-97 3 Streptococcus Streptococcus pneumoniae TIGR4 3 Streptococcus Streptococcus lutetiensis 033 3 Streptococcus Streptococcus constellatus subsp. pharyngis C818 2 Streptococcus Streptococcus pneumoniae CGSP14 2 Streptococcus Streptococcus massiliensis DSM 18628 2 Streptococcus Streptococcus infantis ATCC 700779 2 Streptococcus Streptococcus dysgalactiae subsp. equisimilis GGS_124 2 Streptococcus Streptococcus dysgalactiae subsp. equisimilis RE378 2 Streptococcus Streptococcus suis 2 Streptococcus Streptococcus intermedius C270 2 Streptococcus Streptococcus pasteurianus ATCC 43144 2 Streptococcus Streptococcus pneumoniae G54 2 Streptococcus Streptococcus constellatus subsp. pharyngis C1050 2 Streptococcus Streptococcus marmotae 2 Streptococcus Streptococcus pneumoniae AP200 2 Streptococcus Streptococcus agalactiae 2 Streptococcus Streptococcus suis ST1 1 Streptococcus Streptococcus suis BM407 1 Streptococcus Streptococcus pyogenes M1 476 1 Streptococcus Streptococcus pyogenes MGAS2096 1 Streptococcus Streptococcus suis TL13 1 Streptococcus Streptococcus iniae 1 Streptococcus Streptococcus intermedius JTH08 1 Streptococcus Streptococcus parauberis KCTC 11537 1 Streptococcus Streptococcus sp. FDAARGOS_192 1 Streptococcus Streptococcus suis ST3 1 Streptococcus Streptococcus pyogenes MGAS10394 1 Streptococcus Streptococcus porci DSM 23759 1 Streptococcus Streptococcus ovis DSM 16829 1 Streptococcus Streptococcus macedonicus ACA-DC 198 1 Streptococcus Streptococcus equi subsp. zooepidemicus 1 Streptococcus Streptococcus phocae subsp. salmonis 1 Streptococcus Streptococcus pantholopis 1 Streptococcus Streptococcus ratti FA-1 = DSM 20564 1 Streptococcus Streptococcus merionis DSM 19192 1 Streptococcus Streptococcus intermedius B196 1 Streptococcus Streptococcus anginosus C1051 1 Streptococcus Streptococcus minor DSM 17118 1 Streptococcus Streptococcus pseudopneumoniae IS7493 1 Streptococcus Streptococcus orisratti DSM 15617 1 Streptococcus Streptococcus pyogenes MGAS9429 # 5 reads uniquely mapped to Ureaplasma (multi-hits among diff. species in Ureaplasma allowed) 5 Ureaplasma Ureaplasma parvum serovar 3 # 1265 reads uniquely mapped to Veillonella (multi-hits among diff. species in Veillonella allowed) 761 Veillonella Veillonella parvula 499 Veillonella Veillonella parvula DSM 2008 4 Veillonella Veillonella sp. oral taxon 780 str. F0422 1 Veillonella Veillonella seminalis ACS-216-V-Col6b