# 2020/07/29 17:14:09
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR244701	Replication ID
# SRP000540	Sample ID
# ERR244701_1.filt	Read1
# ERR244701_2.filt	Read2
R1	        1390266 (100.0000%)	[A] Total raw reads
R1	        1366310 (98.2769%)	[B] Total reads after QC of (A)
R1		
R1	        1366310 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        2524018 (92.3662%)	[B-3] Total mapped reads of (B-2)x2
R1	         208602 (7.6338%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1269543 (92.9176%)	[F] Total mapped reads of (B-2)
R1	          96767 (7.0824%)	[G] Total unmapped reads of (B-2)
R1	           9597 (0.7024%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1356713 (99.2976%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	            644 (0.0471%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       474.677	[I-3] RPMH of (I-1)
R1	       471.342	[I-4] PPM of (I-1)
R1	     67104.303	[I-5] RPMU of (I-1)
R1	              0 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R1	         0.000	[I-7] RPMH of (I-6)
R1	         0.000	[I-8] PPM of (I-6)
R1	         0.000	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1390266 (100.0000%)	[A] Total raw reads
R2	        1366310 (98.2769%)	[B] Total reads after QC of (A)
R2		
R2	        1366310 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        2524018 (92.3662%)	[B-3] Total mapped reads of (B-2)x2
R2	         208602 (7.6338%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1254475 (91.8148%)	[F] Total mapped reads of (B-2)
R2	         111835 (8.1852%)	[G] Total unmapped reads of (B-2)
R2	          15382 (1.1258%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1350928 (98.8742%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	            631 (0.0462%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       467.086	[I-3] RPMH of (I-1)
R2	       461.828	[I-4] PPM of (I-1)
R2	     41021.974	[I-5] RPMU of (I-1)
R2	              1 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.740	[I-7] RPMH of (I-6)
R2	         0.732	[I-8] PPM of (I-6)
R2	        65.011	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
474.6767	471.3425	67104.3034	644	0	644	644.000	64275	ALL_R1	viral	Lymphocryptovirus	0.0
<<
465.6059	460.3640	40891.9516	629	0	629	629.000	62819	ALL_R2	viral	Lymphocryptovirus	0.0