# 2020/07/29 15:12:07
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR244461	Replication ID
# SRP000540	Sample ID
# ERR244461_1.filt	Read1
# ERR244461_2.filt	Read2
R1	        1402086 (100.0000%)	[A] Total raw reads
R1	        1378280 (98.3021%)	[B] Total reads after QC of (A)
R1		
R1	        1378280 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        2545496 (92.3432%)	[B-3] Total mapped reads of (B-2)x2
R1	         211064 (7.6568%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1279684 (92.8464%)	[F] Total mapped reads of (B-2)
R1	          98596 (7.1536%)	[G] Total unmapped reads of (B-2)
R1	           9566 (0.6941%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1368714 (99.3059%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	            709 (0.0514%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       518.005	[I-3] RPMH of (I-1)
R1	       514.409	[I-4] PPM of (I-1)
R1	     74116.663	[I-5] RPMU of (I-1)
R1	              1 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         0.731	[I-7] RPMH of (I-6)
R1	         0.725	[I-8] PPM of (I-6)
R1	       104.537	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1402086 (100.0000%)	[A] Total raw reads
R2	        1378280 (98.3021%)	[B] Total reads after QC of (A)
R2		
R2	        1378280 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        2545496 (92.3432%)	[B-3] Total mapped reads of (B-2)x2
R2	         211064 (7.6568%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1265812 (91.8400%)	[F] Total mapped reads of (B-2)
R2	         112468 (8.1600%)	[G] Total unmapped reads of (B-2)
R2	          14963 (1.0856%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1363317 (98.9144%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	            694 (0.0504%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       509.053	[I-3] RPMH of (I-1)
R2	       503.526	[I-4] PPM of (I-1)
R2	     46381.073	[I-5] RPMU of (I-1)
R2	              1 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.733	[I-7] RPMH of (I-6)
R2	         0.725	[I-8] PPM of (I-6)
R2	        66.832	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1.4612	1.4511	209.0738	2	0	2	2.000	200	ALL_R1	bacteria	Cutibacterium	2.55e-10
<<
515.0820	511.5071	73698.5156	705	0	705	705.000	70337	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1.4670	1.4511	133.6630	2	0	2	2.000	200	ALL_R2	bacteria	Cutibacterium	1.01e-10
<<
506.8520	501.3495	46180.5788	691	0	691	691.000	68917	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.7306	0.7255	104.5369	1	0	1	1.000	100	R1U	viral	Lymphocryptovirus	n/a	
<<
0.7335	0.7255	66.8315	1	0	1	1.000	100	R2U	viral	Lymphocryptovirus	n/a