# 2020/08/04 08:35:34
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR242988	Replication ID
# SRP001294	Sample ID
# ERR242988_1.filt	Read1
# ERR242988_2.filt	Read2
R1	        1799789 (100.0000%)	[A] Total raw reads
R1	        1762128 (97.9075%)	[B] Total reads after QC of (A)
R1		
R1	        1762128 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3269457 (92.7701%)	[B-3] Total mapped reads of (B-2)x2
R1	         254799 (7.2299%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1643600 (93.2736%)	[F] Total mapped reads of (B-2)
R1	         118528 (6.7264%)	[G] Total unmapped reads of (B-2)
R1	          12596 (0.7148%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1749532 (99.2852%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	            796 (0.0452%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       454.979	[I-3] RPMH of (I-1)
R1	       451.727	[I-4] PPM of (I-1)
R1	     63194.665	[I-5] RPMU of (I-1)
R1	              3 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         1.715	[I-7] RPMH of (I-6)
R1	         1.702	[I-8] PPM of (I-6)
R1	       238.171	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1799789 (100.0000%)	[A] Total raw reads
R2	        1762128 (97.9075%)	[B] Total reads after QC of (A)
R2		
R2	        1762128 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3269457 (92.7701%)	[B-3] Total mapped reads of (B-2)x2
R2	         254799 (7.2299%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1625857 (92.2667%)	[F] Total mapped reads of (B-2)
R2	         136271 (7.7333%)	[G] Total unmapped reads of (B-2)
R2	          19671 (1.1163%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1742457 (98.8837%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	            771 (0.0438%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       442.479	[I-3] RPMH of (I-1)
R2	       437.539	[I-4] PPM of (I-1)
R2	     39194.754	[I-5] RPMU of (I-1)
R2	              2 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         1.148	[I-7] RPMH of (I-6)
R2	         1.135	[I-8] PPM of (I-6)
R2	       101.673	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1.1432	1.1350	158.7806	2	0	2	2.000	199	ALL_R1	bacteria	Ralstonia	2.07e-08
<<
452.6925	449.4566	62877.1038	792	0	792	792.000	78982	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1.7217	1.7025	152.5088	3	0	3	3.000	296	ALL_R2	bacteria	Ralstonia	1.03e-18
1.1478	1.1350	101.6725	2	0	2	2.000	199	ALL_R2	bacteria	Alcanivorax	1.07e-05
<<
438.4613	433.5667	38838.8999	764	0	764	764.000	76151	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.7147	1.7025	238.1708	3	0	3	3.000	298	R1U	viral	Lymphocryptovirus	n/a	
<<
0.5739	0.5675	50.8363	1	0	1	1.000	100	R2U	viral	Lymphocryptovirus	n/a