# 2020/07/30 05:20:03
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR242762	Replication ID
# SRP000540	Sample ID
# ERR242762_1.filt	Read1
# ERR242762_2.filt	Read2
R1	        1516565 (100.0000%)	[A] Total raw reads
R1	        1489062 (98.1865%)	[B] Total reads after QC of (A)
R1		
R1	        1489062 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        2736266 (91.8788%)	[B-3] Total mapped reads of (B-2)x2
R1	         241858 (8.1212%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1379752 (92.6591%)	[F] Total mapped reads of (B-2)
R1	         109310 (7.3409%)	[G] Total unmapped reads of (B-2)
R1	          11696 (0.7855%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1477366 (99.2145%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           1030 (0.0692%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       697.187	[I-3] RPMH of (I-1)
R1	       691.711	[I-4] PPM of (I-1)
R1	     88064.295	[I-5] RPMU of (I-1)
R1	              4 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R1	         2.707	[I-7] RPMH of (I-6)
R1	         2.686	[I-8] PPM of (I-6)
R1	       341.997	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1516565 (100.0000%)	[A] Total raw reads
R2	        1489062 (98.1865%)	[B] Total reads after QC of (A)
R2		
R2	        1489062 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        2736266 (91.8788%)	[B-3] Total mapped reads of (B-2)x2
R2	         241858 (8.1212%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1356514 (91.0986%)	[F] Total mapped reads of (B-2)
R2	         132548 (8.9014%)	[G] Total unmapped reads of (B-2)
R2	          20399 (1.3699%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1468663 (98.6301%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           1005 (0.0675%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       684.296	[I-3] RPMH of (I-1)
R2	       674.921	[I-4] PPM of (I-1)
R2	     49267.121	[I-5] RPMU of (I-1)
R2	              0 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R2	         0.000	[I-7] RPMH of (I-6)
R2	         0.000	[I-8] PPM of (I-6)
R2	         0.000	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
696.5099	691.0391	87978.7962	1029	0	1029	1029.000	102651	ALL_R1	viral	Lymphocryptovirus	0.0
<<
682.9341	673.5784	49169.0769	1003	0	1003	1003.000	99948	ALL_R2	viral	Lymphocryptovirus	0.0
<<
2.7075	2.6863	341.9973	4	0	4	4.000	400	R1U	viral	Lymphocryptovirus	n/a