# 2020/07/30 00:10:54
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR242165	Replication ID
# SRP000540	Sample ID
# ERR242165_1.filt	Read1
# ERR242165_2.filt	Read2
R1	        1555807 (100.0000%)	[A] Total raw reads
R1	        1527899 (98.2062%)	[B] Total reads after QC of (A)
R1		
R1	        1527899 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        2815905 (92.1496%)	[B-3] Total mapped reads of (B-2)x2
R1	         239893 (7.8504%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1419073 (92.8774%)	[F] Total mapped reads of (B-2)
R1	         108826 (7.1226%)	[G] Total unmapped reads of (B-2)
R1	          11607 (0.7597%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1516292 (99.2403%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           1090 (0.0713%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       718.859	[I-3] RPMH of (I-1)
R1	       713.398	[I-4] PPM of (I-1)
R1	     93908.848	[I-5] RPMU of (I-1)
R1	              1 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         0.660	[I-7] RPMH of (I-6)
R1	         0.655	[I-8] PPM of (I-6)
R1	        86.155	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1555807 (100.0000%)	[A] Total raw reads
R2	        1527899 (98.2062%)	[B] Total reads after QC of (A)
R2		
R2	        1527899 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        2815905 (92.1496%)	[B-3] Total mapped reads of (B-2)x2
R2	         239893 (7.8504%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1396832 (91.4217%)	[F] Total mapped reads of (B-2)
R2	         131067 (8.5783%)	[G] Total unmapped reads of (B-2)
R2	          20064 (1.3132%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1507835 (98.6868%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           1073 (0.0702%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       711.616	[I-3] RPMH of (I-1)
R2	       702.272	[I-4] PPM of (I-1)
R2	     53478.868	[I-5] RPMU of (I-1)
R2	              3 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R2	         1.990	[I-7] RPMH of (I-6)
R2	         1.963	[I-8] PPM of (I-6)
R2	       149.522	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
718.1994	712.7434	93822.6932	1089	0	1089	1089.000	108810	ALL_R1	viral	Lymphocryptovirus	0.0
<<
708.9635	699.6536	53279.5056	1069	0	1069	1069.000	106492	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.6595	0.6545	86.1549	1	0	1	1.000	100	R1U	viral	Lymphocryptovirus	n/a	
<<
1.3264	1.3090	99.6810	2	0	2	2.000	200	R2U	viral	Lymphocryptovirus	n/a	
0.6632	0.6545	49.8405	1	0	1	1.000	100	R2U	viral	Phix174microvirus	n/a