# 2020/07/29 23:27:38
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR242085	Replication ID
# SRP000540	Sample ID
# ERR242085_1.filt	Read1
# ERR242085_2.filt	Read2
R1	        1608054 (100.0000%)	[A] Total raw reads
R1	        1580512 (98.2872%)	[B] Total reads after QC of (A)
R1		
R1	        1580512 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        2923334 (92.4806%)	[B-3] Total mapped reads of (B-2)x2
R1	         237690 (7.5194%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1469521 (92.9775%)	[F] Total mapped reads of (B-2)
R1	         110991 (7.0225%)	[G] Total unmapped reads of (B-2)
R1	          12002 (0.7594%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1568510 (99.2406%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           1179 (0.0746%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       751.669	[I-3] RPMH of (I-1)
R1	       745.961	[I-4] PPM of (I-1)
R1	     98233.628	[I-5] RPMU of (I-1)
R1	              2 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         1.275	[I-7] RPMH of (I-6)
R1	         1.265	[I-8] PPM of (I-6)
R1	       166.639	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1608054 (100.0000%)	[A] Total raw reads
R2	        1580512 (98.2872%)	[B] Total reads after QC of (A)
R2		
R2	        1580512 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        2923334 (92.4806%)	[B-3] Total mapped reads of (B-2)x2
R2	         237690 (7.5194%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1453813 (91.9837%)	[F] Total mapped reads of (B-2)
R2	         126699 (8.0163%)	[G] Total unmapped reads of (B-2)
R2	          17692 (1.1194%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1562820 (98.8806%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           1179 (0.0746%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       754.406	[I-3] RPMH of (I-1)
R2	       745.961	[I-4] PPM of (I-1)
R2	     66640.289	[I-5] RPMU of (I-1)
R2	              2 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         1.280	[I-7] RPMH of (I-6)
R2	         1.265	[I-8] PPM of (I-6)
R2	       113.045	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
751.0312	745.3281	98150.3083	1178	0	1178	1178.000	117486	ALL_R1	viral	Lymphocryptovirus	0.0
<<
752.4859	744.0627	66470.7212	1176	0	1176	1176.000	117176	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.2751	1.2654	166.6389	2	0	2	2.000	200	R1U	viral	Lymphocryptovirus	n/a	
<<
1.2797	1.2654	113.0454	2	0	2	2.000	200	R2U	viral	Lymphocryptovirus	n/a