# 2020/07/29 22:46:34
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR242005	Replication ID
# SRP000540	Sample ID
# ERR242005_1.filt	Read1
# ERR242005_2.filt	Read2
R1	        1612102 (100.0000%)	[A] Total raw reads
R1	        1584383 (98.2806%)	[B] Total reads after QC of (A)
R1		
R1	        1584383 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        2930937 (92.4946%)	[B-3] Total mapped reads of (B-2)x2
R1	         237829 (7.5054%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1473306 (92.9893%)	[F] Total mapped reads of (B-2)
R1	         111077 (7.0107%)	[G] Total unmapped reads of (B-2)
R1	          11765 (0.7426%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1572618 (99.2574%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           1131 (0.0714%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       719.183	[I-3] RPMH of (I-1)
R1	       713.843	[I-4] PPM of (I-1)
R1	     96132.597	[I-5] RPMU of (I-1)
R1	              2 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         1.272	[I-7] RPMH of (I-6)
R1	         1.262	[I-8] PPM of (I-6)
R1	       169.996	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1612102 (100.0000%)	[A] Total raw reads
R2	        1584383 (98.2806%)	[B] Total reads after QC of (A)
R2		
R2	        1584383 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        2930937 (92.4946%)	[B-3] Total mapped reads of (B-2)x2
R2	         237829 (7.5054%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1457631 (91.9999%)	[F] Total mapped reads of (B-2)
R2	         126752 (8.0001%)	[G] Total unmapped reads of (B-2)
R2	          17643 (1.1136%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1566740 (98.8864%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           1088 (0.0687%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       694.436	[I-3] RPMH of (I-1)
R2	       686.703	[I-4] PPM of (I-1)
R2	     61667.517	[I-5] RPMU of (I-1)
R2	              0 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R2	         0.000	[I-7] RPMH of (I-6)
R2	         0.000	[I-8] PPM of (I-6)
R2	         0.000	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
718.5470	713.2114	96047.5988	1130	0	1130	1130.000	112675	ALL_R1	viral	Lymphocryptovirus	0.0
<<
692.5208	684.8092	61497.4778	1085	0	1085	1085.000	108181	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.2718	1.2623	169.9958	2	0	2	2.000	198	R1U	viral	Lymphocryptovirus	n/a