# 2020/07/28 13:15:00
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR263452	Replication ID
# SRP000540	Sample ID
# ERR263452_1.filt	Read1
# ERR263452_2.filt	Read2
R1	        3808743 (100.0000%)	[A] Total raw reads
R1	        3741084 (98.2236%)	[B] Total reads after QC of (A)
R1		
R1	        3741084 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        6875515 (91.8920%)	[B-3] Total mapped reads of (B-2)x2
R1	         606653 (8.1080%)	[B-4] Total unmapped reads of (B-2)x2
R1	        3464293 (92.6013%)	[F] Total mapped reads of (B-2)
R1	         276791 (7.3987%)	[G] Total unmapped reads of (B-2)
R1	          34709 (0.9278%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        3706375 (99.0722%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           9601 (0.2566%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      2590.402	[I-3] RPMH of (I-1)
R1	      2566.369	[I-4] PPM of (I-1)
R1	    276614.135	[I-5] RPMU of (I-1)
R1	              8 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         2.158	[I-7] RPMH of (I-6)
R1	         2.138	[I-8] PPM of (I-6)
R1	       230.488	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        3808743 (100.0000%)	[A] Total raw reads
R2	        3741084 (98.2236%)	[B] Total reads after QC of (A)
R2		
R2	        3741084 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        6875515 (91.8920%)	[B-3] Total mapped reads of (B-2)x2
R2	         606653 (8.1080%)	[B-4] Total unmapped reads of (B-2)x2
R2	        3411222 (91.1827%)	[F] Total mapped reads of (B-2)
R2	         329862 (8.8173%)	[G] Total unmapped reads of (B-2)
R2	          54529 (1.4576%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        3686555 (98.5424%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           9413 (0.2516%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      2553.332	[I-3] RPMH of (I-1)
R2	      2516.116	[I-4] PPM of (I-1)
R2	    172623.742	[I-5] RPMU of (I-1)
R2	              6 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R2	         1.628	[I-7] RPMH of (I-6)
R2	         1.604	[I-8] PPM of (I-6)
R2	       110.033	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2588.7828	2564.7647	276441.2688	9595	0	9595	9595.000	956384	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2550.8910	2513.7099	172458.6917	9404	0	9404	9404.000	936741	ALL_R2	viral	Lymphocryptovirus	0.0
<<
2.1584	2.1384	230.4878	8	0	8	8.000	798	R1U	viral	Lymphocryptovirus	n/a	
<<
1.3563	1.3365	91.6943	5	0	5	5.000	499	R2U	viral	Lymphocryptovirus	n/a	
0.2713	0.2673	18.3389	1	0	1	1.000	100	R2U	viral	Phix174microvirus	n/a