# 2020/07/25 23:36:34
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR245918	Replication ID
# SRP000540	Sample ID
# ERR245918_1.filt	Read1
# ERR245918_2.filt	Read2
R1	        4249610 (100.0000%)	[A] Total raw reads
R1	        4179513 (98.3505%)	[B] Total reads after QC of (A)
R1		
R1	        4179513 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        7739397 (92.5873%)	[B-3] Total mapped reads of (B-2)x2
R1	         619629 (7.4127%)	[B-4] Total unmapped reads of (B-2)x2
R1	        3901879 (93.3573%)	[F] Total mapped reads of (B-2)
R1	         277634 (6.6427%)	[G] Total unmapped reads of (B-2)
R1	          25221 (0.6034%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        4154292 (99.3966%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           1644 (0.0393%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       395.735	[I-3] RPMH of (I-1)
R1	       393.347	[I-4] PPM of (I-1)
R1	     65183.775	[I-5] RPMU of (I-1)
R1	              0 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R1	         0.000	[I-7] RPMH of (I-6)
R1	         0.000	[I-8] PPM of (I-6)
R1	         0.000	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        4249610 (100.0000%)	[A] Total raw reads
R2	        4179513 (98.3505%)	[B] Total reads after QC of (A)
R2		
R2	        4179513 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        7739397 (92.5873%)	[B-3] Total mapped reads of (B-2)x2
R2	         619629 (7.4127%)	[B-4] Total unmapped reads of (B-2)x2
R2	        3837518 (91.8173%)	[F] Total mapped reads of (B-2)
R2	         341995 (8.1827%)	[G] Total unmapped reads of (B-2)
R2	          47703 (1.1414%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        4131810 (98.8586%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           1605 (0.0384%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       388.450	[I-3] RPMH of (I-1)
R2	       384.016	[I-4] PPM of (I-1)
R2	     33645.683	[I-5] RPMU of (I-1)
R2	              4 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.968	[I-7] RPMH of (I-6)
R2	         0.957	[I-8] PPM of (I-6)
R2	        83.852	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
0.4814	0.4785	79.2990	2	0	2	2.000	200	ALL_R1	bacteria	Sphingomonas	2.07e-04
<<
395.0132	392.6295	65064.8269	1641	0	1641	1641.000	163593	ALL_R1	viral	Lymphocryptovirus	0.0
<<
0.4840	0.4785	41.9261	2	0	2	2.000	199	ALL_R2	bacteria	Sphingomonas	1.45e-04
<<
387.2395	382.8197	33540.8675	1600	0	1600	1600.000	159340	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.7261	0.7178	62.8891	3	0	3	3.000	298	R2U	viral	Lymphocryptovirus	n/a	
0.2420	0.2393	20.9630	1	0	1	1.000	100	R2U	viral	Phix174microvirus	n/a