# 2020/07/24 07:15:03
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR244734	Replication ID
# SRP000540	Sample ID
# ERR244734_1.filt	Read1
# ERR244734_2.filt	Read2
R1	        1808974 (100.0000%)	[A] Total raw reads
R1	        1776346 (98.1963%)	[B] Total reads after QC of (A)
R1		
R1	        1776346 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3252185 (91.5414%)	[B-3] Total mapped reads of (B-2)x2
R1	         300507 (8.4586%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1642034 (92.4389%)	[F] Total mapped reads of (B-2)
R1	         134312 (7.5611%)	[G] Total unmapped reads of (B-2)
R1	          12992 (0.7314%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1763354 (99.2686%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	            821 (0.0462%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       465.590	[I-3] RPMH of (I-1)
R1	       462.185	[I-4] PPM of (I-1)
R1	     63192.734	[I-5] RPMU of (I-1)
R1	              3 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         1.701	[I-7] RPMH of (I-6)
R1	         1.689	[I-8] PPM of (I-6)
R1	       230.911	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1808974 (100.0000%)	[A] Total raw reads
R2	        1776346 (98.1963%)	[B] Total reads after QC of (A)
R2		
R2	        1776346 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3252185 (91.5414%)	[B-3] Total mapped reads of (B-2)x2
R2	         300507 (8.4586%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1610151 (90.6440%)	[F] Total mapped reads of (B-2)
R2	         166195 (9.3560%)	[G] Total unmapped reads of (B-2)
R2	          25751 (1.4497%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1750595 (98.5503%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	            810 (0.0456%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       462.700	[I-3] RPMH of (I-1)
R2	       455.992	[I-4] PPM of (I-1)
R2	     31455.089	[I-5] RPMU of (I-1)
R2	              1 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.571	[I-7] RPMH of (I-6)
R2	         0.563	[I-8] PPM of (I-6)
R2	        38.833	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1.1342	1.1259	153.9409	2	0	2	2.000	199	ALL_R1	bacteria	Alcanivorax	4.03e-05
0.5671	0.5630	76.9704	1	0	1	1.000	99	ALL_R1	bacteria	Catonella	2.03e-04
<<
460.4861	457.1182	62500.0000	812	0	812	812.000	81010	ALL_R1	viral	Lymphocryptovirus	0.0
<<
0.5712	0.5630	38.8334	1	0	1	1.000	100	ALL_R2	bacteria	Catonella	1.67e-04
<<
456.9875	450.3627	31066.7547	800	0	800	800.000	79755	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.7013	1.6889	230.9113	3	0	3	3.000	300	R1U	viral	Lymphocryptovirus	n/a	
<<
0.5712	0.5630	38.8334	1	0	1	1.000	37	R2U	bacteria	Mycoplasma	n/a