# 2020/07/23 13:25:03
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR244716	Replication ID
# SRP000540	Sample ID
# ERR244716_1.filt	Read1
# ERR244716_2.filt	Read2
R1	        1567619 (100.0000%)	[A] Total raw reads
R1	        1539497 (98.2061%)	[B] Total reads after QC of (A)
R1		
R1	        1539497 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        2831497 (91.9618%)	[B-3] Total mapped reads of (B-2)x2
R1	         247497 (8.0382%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1423634 (92.4740%)	[F] Total mapped reads of (B-2)
R1	         115863 (7.5260%)	[G] Total unmapped reads of (B-2)
R1	          13259 (0.8613%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1526238 (99.1387%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           3341 (0.2170%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      2189.043	[I-3] RPMH of (I-1)
R1	      2170.189	[I-4] PPM of (I-1)
R1	    251979.787	[I-5] RPMU of (I-1)
R1	              5 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R1	         3.276	[I-7] RPMH of (I-6)
R1	         3.248	[I-8] PPM of (I-6)
R1	       377.102	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1567619 (100.0000%)	[A] Total raw reads
R2	        1539497 (98.2061%)	[B] Total reads after QC of (A)
R2		
R2	        1539497 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        2831497 (91.9618%)	[B-3] Total mapped reads of (B-2)x2
R2	         247497 (8.0382%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1407863 (91.4495%)	[F] Total mapped reads of (B-2)
R2	         131634 (8.5505%)	[G] Total unmapped reads of (B-2)
R2	          19384 (1.2591%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1520113 (98.7409%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           3289 (0.2136%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      2163.655	[I-3] RPMH of (I-1)
R2	      2136.412	[I-4] PPM of (I-1)
R2	    169676.022	[I-5] RPMU of (I-1)
R2	              4 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R2	         2.631	[I-7] RPMH of (I-6)
R2	         2.598	[I-8] PPM of (I-6)
R2	       206.356	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2189.0426	2170.1894	251979.7873	3341	0	3341	3341.000	333374	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2162.9971	2135.7625	169624.4325	3288	0	3288	3288.000	328194	ALL_R2	viral	Lymphocryptovirus	0.0
<<
3.2760	3.2478	377.1023	5	0	5	5.000	499	R1U	viral	Lymphocryptovirus	n/a	
<<
1.9735	1.9487	154.7668	3	0	3	3.000	300	R2U	viral	Lymphocryptovirus	n/a