# 2020/07/25 08:29:09
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR244466	Replication ID
# SRP000540	Sample ID
# ERR244466_1.filt	Read1
# ERR244466_2.filt	Read2
R1	        1650524 (100.0000%)	[A] Total raw reads
R1	        1619742 (98.1350%)	[B] Total reads after QC of (A)
R1		
R1	        1619742 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3003948 (92.7292%)	[B-3] Total mapped reads of (B-2)x2
R1	         235536 (7.2708%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1510078 (93.2295%)	[F] Total mapped reads of (B-2)
R1	         109664 (6.7705%)	[G] Total unmapped reads of (B-2)
R1	          13407 (0.8277%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1606335 (99.1723%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           2396 (0.1479%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1491.594	[I-3] RPMH of (I-1)
R1	      1479.248	[I-4] PPM of (I-1)
R1	    178712.613	[I-5] RPMU of (I-1)
R1	              3 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         1.868	[I-7] RPMH of (I-6)
R1	         1.852	[I-8] PPM of (I-6)
R1	       223.764	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1650524 (100.0000%)	[A] Total raw reads
R2	        1619742 (98.1350%)	[B] Total reads after QC of (A)
R2		
R2	        1619742 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3003948 (92.7292%)	[B-3] Total mapped reads of (B-2)x2
R2	         235536 (7.2708%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1493870 (92.2289%)	[F] Total mapped reads of (B-2)
R2	         125872 (7.7711%)	[G] Total unmapped reads of (B-2)
R2	          20110 (1.2416%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1599632 (98.7584%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           2419 (0.1493%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1512.223	[I-3] RPMH of (I-1)
R2	      1493.448	[I-4] PPM of (I-1)
R2	    120288.414	[I-5] RPMU of (I-1)
R2	              1 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.625	[I-7] RPMH of (I-6)
R2	         0.617	[I-8] PPM of (I-6)
R2	        49.726	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1491.5942	1479.2479	178712.6128	2396	0	2396	2396.000	238874	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1511.5977	1492.8303	120238.6872	2418	0	2418	2418.000	241093	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.8676	1.8521	223.7637	3	0	3	3.000	297	R1U	viral	Lymphocryptovirus	n/a	
<<
0.6251	0.6174	49.7265	1	0	1	1.000	100	R2U	viral	Lymphocryptovirus	n/a