# 2020/07/25 08:09:34
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR244426	Replication ID
# SRP000540	Sample ID
# ERR244426_1.filt	Read1
# ERR244426_2.filt	Read2
R1	        1652275 (100.0000%)	[A] Total raw reads
R1	        1621461 (98.1351%)	[B] Total reads after QC of (A)
R1		
R1	        1621461 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3007729 (92.7475%)	[B-3] Total mapped reads of (B-2)x2
R1	         235193 (7.2525%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1512100 (93.2554%)	[F] Total mapped reads of (B-2)
R1	         109361 (6.7446%)	[G] Total unmapped reads of (B-2)
R1	          13390 (0.8258%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1608071 (99.1742%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           2390 (0.1474%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1486.253	[I-3] RPMH of (I-1)
R1	      1473.979	[I-4] PPM of (I-1)
R1	    178491.412	[I-5] RPMU of (I-1)
R1	              1 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         0.622	[I-7] RPMH of (I-6)
R1	         0.617	[I-8] PPM of (I-6)
R1	        74.683	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1652275 (100.0000%)	[A] Total raw reads
R2	        1621461 (98.1351%)	[B] Total reads after QC of (A)
R2		
R2	        1621461 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3007729 (92.7475%)	[B-3] Total mapped reads of (B-2)x2
R2	         235193 (7.2525%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1495629 (92.2396%)	[F] Total mapped reads of (B-2)
R2	         125832 (7.7604%)	[G] Total unmapped reads of (B-2)
R2	          20078 (1.2383%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1601383 (98.7617%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           2398 (0.1479%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1497.456	[I-3] RPMH of (I-1)
R2	      1478.913	[I-4] PPM of (I-1)
R2	    119434.207	[I-5] RPMU of (I-1)
R2	              6 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R2	         3.747	[I-7] RPMH of (I-6)
R2	         3.700	[I-8] PPM of (I-6)
R2	       298.834	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1486.2528	1473.9793	178491.4115	2390	0	2390	2390.000	238339	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1496.2067	1477.6797	119334.5951	2396	0	2396	2396.000	238871	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.6219	0.6167	74.6826	1	0	1	1.000	100	R1U	viral	Lymphocryptovirus	n/a	
<<
3.1223	3.0836	249.0288	5	0	5	5.000	498	R2U	viral	Lymphocryptovirus	n/a	
0.6245	0.6167	49.8058	1	0	1	1.000	92	R2U	viral	Phix174microvirus	n/a