# 2018/01/25 10:59:58
# HUMAN	Target (Host) organism
# RNA	Sequencing source
# SU-DHL-1_1	Replication ID
# SU-DHL-1	Sample ID
# CVCL_0538_1	Read1
# CVCL_0538_2	Read2
R1	  95582292 (100.0000%)	[A] Total raw reads
R1	  84133385 (88.0219%)	[B] Total reads after QC of (A)
R1		
R1	  84133385 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	 160004679 (95.0899%)	[B-3] Total mapped reads of (B-2)x2
R1	   8262091 (4.9101%)	[B-4] Total unmapped reads of (B-2)x2
R1	  80232424 (95.3634%)	[F] Total mapped reads of (B-2)
R1	   3900961 (4.6366%)	[G] Total unmapped reads of (B-2)
R1	     92338 (0.1098%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	  84041047 (99.8902%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	      3072 (0.0037%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	        36.554	[I-3] RPMH of (I-1)
R1	        36.513	[I-4] PPM of (I-1)
R1	        46 (0.0001%)	[I-5] Total chimeric reads of (I-1)
R1	         0.547	[I-7] RPMH of (I-5)
R1	         0.547	[I-8] PPM of (I-5)
R1		
## -----------------------------------------

R2	  95582292 (100.0000%)	[A] Total raw reads
R2	  84133385 (88.0219%)	[B] Total reads after QC of (A)
R2		
R2	  84133385 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	 160004679 (95.0899%)	[B-3] Total mapped reads of (B-2)x2
R2	   8262091 (4.9101%)	[B-4] Total unmapped reads of (B-2)x2
R2	  79772255 (94.8164%)	[F] Total mapped reads of (B-2)
R2	   4361130 (5.1836%)	[G] Total unmapped reads of (B-2)
R2	    140789 (0.1673%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	  83992596 (99.8327%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	      3128 (0.0037%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	        37.241	[I-3] RPMH of (I-1)
R2	        37.179	[I-4] PPM of (I-1)
R2	        58 (0.0001%)	[I-5] Total chimeric reads of (I-1)
R2	         0.691	[I-7] RPMH of (I-5)
R2	         0.689	[I-8] PPM of (I-5)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMH   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
5.5667	5.5606	793	466	327	467.834	77375	ALL_R1	bacteria	Cutibacterium	0.0
3.3891	3.3854	463	285	178	284.826	45437	ALL_R1	bacteria	Pseudomonas	0.0
1.8166	1.8146	421	369	52	152.672	41411	ALL_R1	bacteria	Lactobacillus	0.0
1.5940	1.5922	425	394	31	133.958	41614	ALL_R1	bacteria	Sphingomonas	3.41e-211
1.5560	1.5543	462	456	6	130.767	45126	ALL_R1	bacteria	Bacillus	3.15e-08
1.4305	1.4289	304	252	52	120.220	29851	ALL_R1	bacteria	Sphingobium	0.0
1.3829	1.3814	461	426	35	116.219	44757	ALL_R1	bacteria	Corynebacterium	0.0
1.1972	1.1959	419	403	16	100.616	40801	ALL_R1	bacteria	Actinomyces	4.11e-65
1.1618	1.1605	330	323	7	97.639	32200	ALL_R1	bacteria	Planococcus	9.39e-10
1.1248	1.1236	226	174	52	94.530	22190	ALL_R1	bacteria	Acinetobacter	0.0
1.1125	1.1113	284	265	19	93.495	27466	ALL_R1	bacteria	Burkholderia	9.49e-221
1.0179	1.0168	223	190	33	85.547	21729	ALL_R1	bacteria	Enterobacter	0.0
<<
5.9252	5.9152	784	445	339	497.670	74147	ALL_R2	bacteria	Cutibacterium	0.0
3.3736	3.3680	458	278	180	283.359	44152	ALL_R2	bacteria	Pseudomonas	0.0
1.8934	1.8902	423	366	57	159.031	40571	ALL_R2	bacteria	Lactobacillus	0.0
1.7176	1.7147	431	402	29	144.266	41172	ALL_R2	bacteria	Sphingomonas	2.38e-177
1.6370	1.6343	423	387	36	137.497	39770	ALL_R2	bacteria	Corynebacterium	0.0
1.5920	1.5893	442	432	10	133.716	42301	ALL_R2	bacteria	Bacillus	3.19e-23
1.4521	1.4497	305	257	48	121.965	29215	ALL_R2	bacteria	Sphingobium	0.0
1.2137	1.2116	377	364	13	101.938	35604	ALL_R2	bacteria	Actinomyces	1.52e-40
1.1765	1.1746	304	290	14	98.820	28689	ALL_R2	bacteria	Burkholderia	2.26e-111
1.0604	1.0587	211	164	47	89.069	20492	ALL_R2	bacteria	Acinetobacter	3.88e-285