# 2020/07/24 03:51:34
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR242899	Replication ID
# SRP000540	Sample ID
# ERR242899_1.filt	Read1
# ERR242899_2.filt	Read2
R1	        1673153 (100.0000%)	[A] Total raw reads
R1	        1642630 (98.1757%)	[B] Total reads after QC of (A)
R1		
R1	        1642630 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3009269 (91.5991%)	[B-3] Total mapped reads of (B-2)x2
R1	         275991 (8.4009%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1517378 (92.3749%)	[F] Total mapped reads of (B-2)
R1	         125252 (7.6251%)	[G] Total unmapped reads of (B-2)
R1	          12033 (0.7325%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1630597 (99.2675%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	            820 (0.0499%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       502.883	[I-3] RPMH of (I-1)
R1	       499.200	[I-4] PPM of (I-1)
R1	     68145.932	[I-5] RPMU of (I-1)
R1	              1 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         0.613	[I-7] RPMH of (I-6)
R1	         0.609	[I-8] PPM of (I-6)
R1	        83.105	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1673153 (100.0000%)	[A] Total raw reads
R2	        1642630 (98.1757%)	[B] Total reads after QC of (A)
R2		
R2	        1642630 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3009269 (91.5991%)	[B-3] Total mapped reads of (B-2)x2
R2	         275991 (8.4009%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1491891 (90.8233%)	[F] Total mapped reads of (B-2)
R2	         150739 (9.1767%)	[G] Total unmapped reads of (B-2)
R2	          22035 (1.3414%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1620595 (98.6586%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	            782 (0.0476%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       482.539	[I-3] RPMH of (I-1)
R2	       476.066	[I-4] PPM of (I-1)
R2	     35488.995	[I-5] RPMU of (I-1)
R2	              0 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R2	         0.000	[I-7] RPMH of (I-6)
R2	         0.000	[I-8] PPM of (I-6)
R2	         0.000	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2.4531	2.4351	332.4192	4	0	4	4.000	400	ALL_R1	bacteria	Tetrasphaera	4.72e-10
1.2265	1.2176	166.2096	2	0	2	2.000	200	ALL_R1	bacteria	Prevotella	3.93e-05
1.2265	1.2176	166.2096	2	0	2	2.000	200	ALL_R1	bacteria	Actinomyces	5.47e-08
<<
496.1373	492.5029	67231.7793	809	0	809	809.000	80763	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1.8512	1.8263	136.1470	3	0	3	3.000	299	ALL_R2	bacteria	Prevotella	1.42e-11
<<
475.7512	469.3692	34989.7890	771	0	771	771.000	76752	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.6133	0.6088	83.1048	1	0	1	1.000	100	R1U	viral	Lymphocryptovirus	n/a