# 2020/07/23 10:13:16
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR242881	Replication ID
# SRP000540	Sample ID
# ERR242881_1.filt	Read1
# ERR242881_2.filt	Read2
R1	        1597634 (100.0000%)	[A] Total raw reads
R1	        1567496 (98.1136%)	[B] Total reads after QC of (A)
R1		
R1	        1567496 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        2867417 (91.4649%)	[B-3] Total mapped reads of (B-2)x2
R1	         267575 (8.5351%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1445516 (92.2182%)	[F] Total mapped reads of (B-2)
R1	         121980 (7.7818%)	[G] Total unmapped reads of (B-2)
R1	          13953 (0.8901%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1553543 (99.1099%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           3483 (0.2222%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      2241.972	[I-3] RPMH of (I-1)
R1	      2222.015	[I-4] PPM of (I-1)
R1	    249623.737	[I-5] RPMU of (I-1)
R1	              7 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R1	         4.506	[I-7] RPMH of (I-6)
R1	         4.466	[I-8] PPM of (I-6)
R1	       501.684	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1597634 (100.0000%)	[A] Total raw reads
R2	        1567496 (98.1136%)	[B] Total reads after QC of (A)
R2		
R2	        1567496 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        2867417 (91.4649%)	[B-3] Total mapped reads of (B-2)x2
R2	         267575 (8.5351%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1421901 (90.7116%)	[F] Total mapped reads of (B-2)
R2	         145595 (9.2884%)	[G] Total unmapped reads of (B-2)
R2	          22934 (1.4631%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1544562 (98.5369%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           3371 (0.2151%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      2182.496	[I-3] RPMH of (I-1)
R2	      2150.564	[I-4] PPM of (I-1)
R2	    146987.006	[I-5] RPMU of (I-1)
R2	              5 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R2	         3.237	[I-7] RPMH of (I-6)
R2	         3.190	[I-8] PPM of (I-6)
R2	       218.017	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2241.9721	2222.0152	249623.7368	3483	0	3483	3483.000	347551	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2181.2009	2149.2878	146899.7994	3369	0	3369	3369.000	335670	ALL_R2	viral	Lymphocryptovirus	0.0
<<
4.5058	4.4657	501.6842	7	0	7	7.000	700	R1U	viral	Lymphocryptovirus	n/a	
<<
3.2372	3.1898	218.0169	5	0	5	5.000	498	R2U	viral	Lymphocryptovirus	n/a