# 2020/07/23 09:52:37
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR242844	Replication ID
# SRP000540	Sample ID
# ERR242844_1.filt	Read1
# ERR242844_2.filt	Read2
R1	        1597342 (100.0000%)	[A] Total raw reads
R1	        1566605 (98.0757%)	[B] Total reads after QC of (A)
R1		
R1	        1566605 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        2865940 (91.4698%)	[B-3] Total mapped reads of (B-2)x2
R1	         267270 (8.5302%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1445246 (92.2534%)	[F] Total mapped reads of (B-2)
R1	         121359 (7.7466%)	[G] Total unmapped reads of (B-2)
R1	          13498 (0.8616%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1553107 (99.1384%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           3392 (0.2165%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      2184.009	[I-3] RPMH of (I-1)
R1	      2165.192	[I-4] PPM of (I-1)
R1	    251296.488	[I-5] RPMU of (I-1)
R1	              1 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         0.644	[I-7] RPMH of (I-6)
R1	         0.638	[I-8] PPM of (I-6)
R1	        74.085	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1597342 (100.0000%)	[A] Total raw reads
R2	        1566605 (98.0757%)	[B] Total reads after QC of (A)
R2		
R2	        1566605 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        2865940 (91.4698%)	[B-3] Total mapped reads of (B-2)x2
R2	         267270 (8.5302%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1420694 (90.6862%)	[F] Total mapped reads of (B-2)
R2	         145911 (9.3138%)	[G] Total unmapped reads of (B-2)
R2	          23045 (1.4710%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1543560 (98.5290%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           3326 (0.2123%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      2154.759	[I-3] RPMH of (I-1)
R2	      2123.062	[I-4] PPM of (I-1)
R2	    144326.318	[I-5] RPMU of (I-1)
R2	              4 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R2	         2.591	[I-7] RPMH of (I-6)
R2	         2.553	[I-8] PPM of (I-6)
R2	       173.573	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2182.7215	2163.9150	251148.3183	3390	0	3390	3390.000	338218	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2153.4634	2121.7856	144239.5314	3324	0	3324	3324.000	331319	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.6439	0.6383	74.0850	1	0	1	1.000	100	R1U	viral	Lymphocryptovirus	n/a	
<<
2.5914	2.5533	173.5734	4	0	4	4.000	400	R2U	viral	Lymphocryptovirus	n/a