# 2020/07/25 05:34:33
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR242682	Replication ID
# SRP000540	Sample ID
# ERR242682_1.filt	Read1
# ERR242682_2.filt	Read2
R1	        1628426 (100.0000%)	[A] Total raw reads
R1	        1595579 (97.9829%)	[B] Total reads after QC of (A)
R1		
R1	        1595579 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        2942034 (92.1933%)	[B-3] Total mapped reads of (B-2)x2
R1	         249124 (7.8067%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1484445 (93.0349%)	[F] Total mapped reads of (B-2)
R1	         111134 (6.9651%)	[G] Total unmapped reads of (B-2)
R1	          13415 (0.8408%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1582164 (99.1592%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           2261 (0.1417%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1429.055	[I-3] RPMH of (I-1)
R1	      1417.040	[I-4] PPM of (I-1)
R1	    168542.676	[I-5] RPMU of (I-1)
R1	              5 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R1	         3.160	[I-7] RPMH of (I-6)
R1	         3.134	[I-8] PPM of (I-6)
R1	       372.717	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1628426 (100.0000%)	[A] Total raw reads
R2	        1595579 (97.9829%)	[B] Total reads after QC of (A)
R2		
R2	        1595579 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        2942034 (92.1933%)	[B-3] Total mapped reads of (B-2)x2
R2	         249124 (7.8067%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1457589 (91.3517%)	[F] Total mapped reads of (B-2)
R2	         137990 (8.6483%)	[G] Total unmapped reads of (B-2)
R2	          23967 (1.5021%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1571612 (98.4979%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           2213 (0.1387%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1408.108	[I-3] RPMH of (I-1)
R2	      1386.957	[I-4] PPM of (I-1)
R2	     92335.294	[I-5] RPMU of (I-1)
R2	              0 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R2	         0.000	[I-7] RPMH of (I-6)
R2	         0.000	[I-8] PPM of (I-6)
R2	         0.000	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1427.7913	1415.7870	168393.5893	2259	0	2259	2259.000	225339	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1408.1084	1386.9573	92335.2944	2213	0	2213	2213.000	220583	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.8961	1.8802	223.6303	3	0	3	3.000	299	R1U	viral	Lymphocryptovirus	n/a	
0.6320	0.6267	74.5434	1	0	1	1.000	100	R1U	viral	Phix174microvirus	n/a