# 2020/07/25 05:04:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR242642	Replication ID
# SRP000540	Sample ID
# ERR242642_1.filt	Read1
# ERR242642_2.filt	Read2
R1	        1805705 (100.0000%)	[A] Total raw reads
R1	        1770922 (98.0737%)	[B] Total reads after QC of (A)
R1		
R1	        1770922 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3269943 (92.3232%)	[B-3] Total mapped reads of (B-2)x2
R1	         271901 (7.6768%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1649441 (93.1402%)	[F] Total mapped reads of (B-2)
R1	         121481 (6.8598%)	[G] Total unmapped reads of (B-2)
R1	          14906 (0.8417%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1756016 (99.1583%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           2592 (0.1464%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1476.069	[I-3] RPMH of (I-1)
R1	      1463.644	[I-4] PPM of (I-1)
R1	    173889.709	[I-5] RPMU of (I-1)
R1	              8 (0.0005%)	[I-6] Total chimeric reads of (I-1)
R1	         4.556	[I-7] RPMH of (I-6)
R1	         4.517	[I-8] PPM of (I-6)
R1	       536.697	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1805705 (100.0000%)	[A] Total raw reads
R2	        1770922 (98.0737%)	[B] Total reads after QC of (A)
R2		
R2	        1770922 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3269943 (92.3232%)	[B-3] Total mapped reads of (B-2)x2
R2	         271901 (7.6768%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1620502 (91.5061%)	[F] Total mapped reads of (B-2)
R2	         150420 (8.4939%)	[G] Total unmapped reads of (B-2)
R2	          27394 (1.5469%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1743528 (98.4531%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           2524 (0.1425%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1447.639	[I-3] RPMH of (I-1)
R2	      1425.246	[I-4] PPM of (I-1)
R2	     92136.964	[I-5] RPMU of (I-1)
R2	              4 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R2	         2.294	[I-7] RPMH of (I-6)
R2	         2.259	[I-8] PPM of (I-6)
R2	       146.017	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1476.0686	1463.6444	173889.7088	2592	0	2592	2592.000	258499	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1447.6395	1425.2463	92136.9643	2524	0	2524	2524.000	251481	ALL_R2	viral	Lymphocryptovirus	0.0
<<
3.9863	3.9527	469.6096	7	0	7	7.000	697	R1U	viral	Lymphocryptovirus	n/a	
<<
2.2942	2.2587	146.0174	4	0	4	4.000	399	R2U	viral	Lymphocryptovirus	n/a