# 2020/07/25 03:41:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR242562	Replication ID
# SRP000540	Sample ID
# ERR242562_1.filt	Read1
# ERR242562_2.filt	Read2
R1	        1773557 (100.0000%)	[A] Total raw reads
R1	        1739106 (98.0575%)	[B] Total reads after QC of (A)
R1		
R1	        1739106 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3207991 (92.2310%)	[B-3] Total mapped reads of (B-2)x2
R1	         270221 (7.7690%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1619329 (93.1127%)	[F] Total mapped reads of (B-2)
R1	         119777 (6.8873%)	[G] Total unmapped reads of (B-2)
R1	          14745 (0.8478%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1724361 (99.1522%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           2561 (0.1473%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1485.188	[I-3] RPMH of (I-1)
R1	      1472.596	[I-4] PPM of (I-1)
R1	    173685.995	[I-5] RPMU of (I-1)
R1	              5 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R1	         2.900	[I-7] RPMH of (I-6)
R1	         2.875	[I-8] PPM of (I-6)
R1	       339.098	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1773557 (100.0000%)	[A] Total raw reads
R2	        1739106 (98.0575%)	[B] Total reads after QC of (A)
R2		
R2	        1739106 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3207991 (92.2310%)	[B-3] Total mapped reads of (B-2)x2
R2	         270221 (7.7690%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1588662 (91.3493%)	[F] Total mapped reads of (B-2)
R2	         150444 (8.6507%)	[G] Total unmapped reads of (B-2)
R2	          26902 (1.5469%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1712204 (98.4531%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           2515 (0.1446%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1468.867	[I-3] RPMH of (I-1)
R2	      1446.145	[I-4] PPM of (I-1)
R2	     93487.473	[I-5] RPMU of (I-1)
R2	              2 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         1.168	[I-7] RPMH of (I-6)
R2	         1.150	[I-8] PPM of (I-6)
R2	        74.344	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1484.6079	1472.0207	173618.1757	2560	0	2560	2560.000	255214	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1467.6989	1444.9953	93413.1291	2513	0	2513	2513.000	250400	ALL_R2	viral	Lymphocryptovirus	0.0
<<
2.8996	2.8750	339.0980	5	0	5	5.000	498	R1U	viral	Lymphocryptovirus	n/a	
<<
0.5840	0.5750	37.1720	1	0	1	1.000	99	R2U	bacteria	Nocardia	n/a	
<<
0.5840	0.5750	37.1720	1	0	1	1.000	100	R2U	viral	Lymphocryptovirus	n/a