# 2020/07/23 22:11:33
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR242310	Replication ID
# SRP000540	Sample ID
# ERR242310_1.filt	Read1
# ERR242310_2.filt	Read2
R1	        1728584 (100.0000%)	[A] Total raw reads
R1	        1696725 (98.1569%)	[B] Total reads after QC of (A)
R1		
R1	        1696725 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3117927 (91.8807%)	[B-3] Total mapped reads of (B-2)x2
R1	         275523 (8.1193%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1571445 (92.6164%)	[F] Total mapped reads of (B-2)
R1	         125280 (7.3836%)	[G] Total unmapped reads of (B-2)
R1	          12393 (0.7304%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1684332 (99.2696%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	            840 (0.0495%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       498.714	[I-3] RPMH of (I-1)
R1	       495.071	[I-4] PPM of (I-1)
R1	     67780.199	[I-5] RPMU of (I-1)
R1	              1 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         0.594	[I-7] RPMH of (I-6)
R1	         0.589	[I-8] PPM of (I-6)
R1	        80.691	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1728584 (100.0000%)	[A] Total raw reads
R2	        1696725 (98.1569%)	[B] Total reads after QC of (A)
R2		
R2	        1696725 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3117927 (91.8807%)	[B-3] Total mapped reads of (B-2)x2
R2	         275523 (8.1193%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1546482 (91.1451%)	[F] Total mapped reads of (B-2)
R2	         150243 (8.8549%)	[G] Total unmapped reads of (B-2)
R2	          22194 (1.3080%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1674531 (98.6920%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	            842 (0.0496%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       502.827	[I-3] RPMH of (I-1)
R2	       496.250	[I-4] PPM of (I-1)
R2	     37938.181	[I-5] RPMU of (I-1)
R2	              1 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.597	[I-7] RPMH of (I-6)
R2	         0.589	[I-8] PPM of (I-6)
R2	        45.057	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1.1874	1.1787	161.3814	2	0	2	2.000	200	ALL_R1	bacteria	Prevotella	6.25e-05
<<
492.7770	489.1777	66973.2914	830	0	830	830.000	82803	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1.7915	1.7681	135.1717	3	0	3	3.000	298	ALL_R2	bacteria	Prevotella	4.53e-10
<<
496.2584	489.7671	37442.5520	831	0	831	831.000	82818	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.5937	0.5894	80.6907	1	0	1	1.000	100	R1U	viral	Lymphocryptovirus	n/a	
<<
0.5972	0.5894	45.0572	1	0	1	1.000	96	R2U	viral	Lymphocryptovirus	n/a